AT3G26550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G10370.1); Has 1904 Blast hits to 942 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 0; Plants - 1593; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9746995..9749040 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78810.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.11 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||
| Length | 681 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSVGVFDKV EMDEKSYLVY TLTQTKHPTS SAVESSGDDL PLQPLFSCPY ARIRSHKFKV EKNYDGVNFF NFHPFNSYPH FPRTRTSYQQ GESLLDYDHH 101: NICKFPVVPL FWCNNKTPDS NEFECGGCEE SKTSRSYYAC LECGNKFHKQ CVESPLEIKH PSHPFHSLRL YSHPTHMVCI CCGRLVSNMF YHCVTCDLSM 201: DPICAMEPIP FVVDHPKSHP HPITFFPTQA TLACNICGLV KMLDPTYICI QCVFVIHKDC MGYPHVIRIS RHQHRISFAS SLPYGNLSCG VCHQRVDNNY 301: GAYSCGKCDA YFVHSKCAFH RNVWDGKELE GVSEEDDIID DGEPFERISD GVILHPYHSH HLRLEISKVY DENKYCRGCS FPIYEGQFYS CMECDFILHE 401: SCANAPRMKR HPLHPHPLTL NVATKELGNN EGVYHCNVCG RDGTGFFYEH HIGERRFRLD LRCASIREPF EYQCHKHPLC IASELEKKVR CQICKGKSYS 501: KLNCMECDYI ICFRCATFPY KVRYKHDSHF LRIRDGKKAS DEPDWCEVCE GKIEEVKERE SPWDKRREMR FYKCNDCCTT LHVECLLGRD MYMKPGNSVK 601: DYISKHSLGI EGTQWTDVRV FLNSSLSRPI CTGCMRRCLF PIVFKGYNTI FCSWECIGYG DTVFEHPTSN PFSSIVELEL M |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)