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AT5G48110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Terpenoid cyclases/Protein prenyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G70080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G48110EnsemblPlants:AT5G48110.1entrez:834863hmmpanther:PTHR31045
hmmpanther:PTHR31045:SF4ncoils:CoilPfam:PF01397Pfam:PF03936
Coordinates (TAIR10) chr5:-:19501157..19504357
Molecular Weight (calculated) 66949.40 Da
IEP (calculated) 6.26
GRAVY (calculated) -0.28
Length 575 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAITKNGSL SQTLVHCGPK SLSSFIPVRC LRFSKNPFPK KLVVTRARTS INSDHEAANR PLFQFPPSLL DDRFLSISAN QSEIDSLGRD IEALKAKVSE
101: KLVCMDVKER IHLIHLLVSL GVAYHFEKQI EEFLKVDFEN VEDMNLGEED MYSISVIFRV FRLYRHKLSS DVFNRFKEEN GDFKKCLLDD KKSLTKQWAS
201: RGNTWNYFVG GSNEEHLSGH IKNVLYLSQQ ENAEVVMSRE YIQFYEQETH HDETLLKFAK INFKFMQLHY VQELQTIVKW WKELDLESKI PNYYRVRAVE
301: CLYWAMAVYM EPQYSVARII LSKSLVLWTI IDDLYDAYCT LPEAIAFTEN MERWETDAID MPDHMKVLLR SLIDLMEDFK GEVRSEGRLY SVEYGIDEWK
401: RLFRADLTIS KWARTGYIPN YDEYMEVGIV TGGVDVTVAF AFIGMGEAGK EAFDWIRSRP KFIQTIDLKS RLRDDVATYK DEMARGEIAT GINCYMKQYK
501: VTEEEAFLEF HRRIKHTSKL VNEEYFKTTV PLKLVRIAFN VGRVIDTNYK HGDGLTYTGI VGGQITSLFL DLITI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)