AT5G48090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : EDM2-like protein1 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
EDM2-like protein1 (ELP1); BEST Arabidopsis thaliana protein match is: ENHANCED DOWNY MILDEW 2 (TAIR:AT5G55390.2); Has 373 Blast hits to 351 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19484724..19488383 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77036.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.08 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||
| Length | 677 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRDEDLTKS KFLITFLGKT SQTTPIEVEL PTDHLQDAQT PMEQDSIVEN MTDEENSSSS DDDSEANLQF DPVCSICDNG GYVLCCEGSC LRSFHPTIAD 101: GIETECESLG FTDKTQIQAL GTYLCNNCLY KQHQCYACGE LGSSDENFSQ QVFPCSASNC GHFYHPECVA RLLCADDQNK AEELQAKIAA RDCFACPLHT 201: CKLCNMSEDK NQYACILLYA DVAQQLITEN VYLGILLLNS TLTMRHCKEL GKVCFLTTAF LYIVSFHKLL NRAHEIDGLI LTPARDHLVF PDVSGQRRTR 301: SHGLAQFKED VLGMETDHCH HEGLFTGLGI TDPYEKPKKD ISCDEVEQRV MGIIDEVESS FNFDEFVKSR RPTHIKSYHS GNYFSKNITT GLVRTHVNAA 401: RAALKMFEEG RDRDARALFD PDSLLQLMKH KKKLEISPFL HGMRYTSFGR HFTNPEKLKE IVERLHWYVE NGDTVVDFCC GSNDFSCLMK EKLMETGKIC 501: FYKNLDLIPP KNNFNFEMRD WLSVKEEELP DGSQLIMGLN PPFGYKASLA NTFIKKALEF KPKILILIVP SETKRVDAID DYELIWEDRN LLAGMSFYLP 601: GSVDVNDKTI EQWNNITPPL YLWSRRDLSR SHKTTAVQQG HITQMHHFTY NGDSHHTEIP QGDDDTDMVQ DMEISPT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)