AT2G19930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.902 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-dependent RNA polymerase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-dependent RNA polymerase family protein; FUNCTIONS IN: RNA-directed RNA polymerase activity; INVOLVED IN: posttranscriptional gene silencing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase family protein (TAIR:AT2G19910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8607533..8612441 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110895.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.10 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||
| Length | 977 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNQASSRIRI ALSGRIETAL ENIYRKHNLT PINDETRQRL SSIPENLGFE LVRKVFSLQA GLIYNLDSFI VSKVNQAVSF TGYPQPANSL SPSGRHVSRV 101: LQEEMSVDSD APSPKSLKSE DKGGSLHIPQ LVALGELEFK KVFLLLSYIP GQHVGQVITA DEIRLWKDLP MVEYEAAVWD RLGRHYCPQK DRRMLQWDSG 201: KTHYYQCNVA PNGSYTFKVL SALQGPLLEH TGTHLHKVLG DDNVLTVKFA DVQKSSSTYS IDHYFTYKGI AKNGIMIGLR RYQFFVFKDG GKEEKKKDLS 301: TKKVKCYFIR TDSTAFYDMQ NPYILTGKSI YEARMHFMHV HRAPTLANYM ARFSLILSKT KTLEVDMTGI TFDQIDDIHC HDQDGKDVLD KNKKPCIHSD 401: GTGYISEDLA RMCPLNIFKG KCLRSESIQE ACYQDPPLLI QFRMFYDGYA VKGTFLLNKK LCPRTVQVRP SMIKVSKDPS LSNFSTFNAL EVVTTSNPPK 501: RTKLSKNLVA LLSYGGIPNE FFLDILLNTL EESKSIFYNK RAALNAALNY GEMDDQNAAQ MILVGIPLDE PHLKNYLSIL LKTEKNDLKA GKLPVTESYY 601: LMGTVDPTGA LKEDEVCVIL ESGQISGEVL VYRNPGLHFG DIHILKATYV KALEEYVGNS KFAVFFPQKG PRSLGDEIAG GDFDGDMYFI SRNPELLENF 701: KPSEPWVSLT PPSKSNSGRA PSQLSPEELE EELFEMFLTA GFHASNVIGI AADSWLTIMD RFLILGDDRA EEKAEMKKKM LELIDIYYDA LDAPKKGDKV 801: YLPNKLKPDI FPHYMERDKK FQSTSILGLI FDFVKSQTTE EPSPSSEISK LPCFEDEPVS EFHMQKCRLW YDNYRTEMTQ AMKTDKDESA NEVIQRYKQE 901: FYGAAGFEDS KKSLEELYPQ ALALYKIVYD YAIHAGVSKC RFVWKVAGPV LCRFYLNKKM QEKCLVCAPS VLKELWG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)