AT1G80570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.536 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30290828..30292231 | ||||||||
| Molecular Weight (calculated) | 52178.70 Da | ||||||||
| IEP (calculated) | 6.62 | ||||||||
| GRAVY (calculated) | 0.11 | ||||||||
| Length | 467 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MDELPDHLVW DILSKLHTTD DRNSLSLSCK RFFSLDNEQR YSLRIGCGLV PASDALLSLC RRFPNLSKVE IIYSGWMSKL GKQVDDQGLL VLTTNCHSLT 101: DLTLSFCTFI TDVGIGHLSS CPELSSLKLN FAPRITGCGV LSLAVGCKKL RRLHLIRCLN VASVEWLEYF GKLETLEELC IKNCRAIGEG DLIKLRNSWR 201: KLTSLQFEVD ANYRYMKVYD QLDVERWPKQ LVPCDSLVEL SLGNCIIAPG RGLACVLRNC KNLEKLHLDM CTGVSDSDII ALVQKASHLR SISLRVPSDF 301: TLPLLNNITL RLTDESLSAI AQHCSKLESF KISFSDGEFP SLFSFTLQGI ITLIQKCPVR ELSLDHVCVF NDMGMEALCS AQKLEILELV HCQEVSDEGL 401: ILVSQFPSLN VLKLSKCLGV TDDGMRPLVG SHKLELLVVE DCPQVSRRGV HGAATSVSFK QDLSWMY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)