AT1G10095.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.823 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein prenylyltransferase superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein prenylyltransferase superfamily protein; FUNCTIONS IN: protein prenyltransferase activity; INVOLVED IN: protein amino acid prenylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); Has 876 Blast hits to 751 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 510; Fungi - 118; Plants - 152; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:3297478..3300353 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48648.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.41 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||
| Length | 420 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKQGPSSEDD CFSLLKQFEH VLESDPLIDE VGFIHPSQFT MLDKEAGFSN EFQPNNGTSS KFWNQDHKLG ISTDILVQLC KDAKHVFLLA LQEYKSHGNA 101: CDESQIKNIS CSPCIPESDV MKHSQSVLLL SSDFGTAWNA RKLILSKKDH LSAFTEELRL SGLILSNSPK SESTWSHRRW IIKMISQSFS TLQEIITKES 201: ELVESIGERS KMNYRAWYHR CWLVSYMTIE QVIQELNKSK RWAGLHVADS SCFHYRRRLM LKILESLYVK GSSAYDKTEA RKIWKEELDW NEELVERYVG 301: REALWLHRRF LSLNWIMYFA CNHSDASPET GESIIMNEEI AIFIDNEIRL LDSSMTVPDT KFEDFQAQAL HAAVYTLWLT KSIPVLWRML EEKLGTEKVK 401: CVLNTIAQER PSLLHHLVNV |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)