AT3G06210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1880093..1883317 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94480.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.14 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||
| Length | 840 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYSENIGEDD RSIHLQVLEL QKLEEARGSS DTVLDYRNSV EKGDSGETAD AASVSSAIAF HRSTSPAPEQ KLTLFALRLA IIEKIATNLG TLGFIWATVV 101: LLGGFAITLE KSDFWFITII LLIEGTRIFS RSHELEWQHQ ATWTVSGVGI SSFRVLQSSS ISLLRNLKRI SDGIFKPILD NGLREATTRI GRQEIFDRRT 201: TLTWKNSEVP LLPYARWLYI SSYVSRILYW LQLLSASACV ALSSYKLVMH NYGDVQDGDL DKRNRQAALS IFYSLALAEA LLFLAEKAYW EWEVSVCHLL 301: ENVTRECGFG VTGMVSIKRF FYDAYSKSVN GSIFDGVKMD MVSFAMDLLG SNCSDEQLIG ARILRQFAVN ERFAEDTLEK IGINLPVIER LVEMLNWKDL 401: QEEEIRRSAA EILSKLAGKK QNSLRVAGIS GAMESISSLL QNTRSLGEAP DEIGEKKLFH DHHLHYDFWR FNNLGLLILK KLSRDHDNCG KIGNTRGLLP 501: KIIDFTHTDA TLLKDENADM VLSRVLTVKR SLQLVKMLVS TSGNTGKCLR REISEIVFTI SNLRDVLRHG VRYPKLQKLG IEILSFLALE TDGRERIAVT 601: GGVLKELFSI FLKSKIHGDE NEKRVRMAAG EAIGMLALES RSNCIQILKL GVFGRLVEAL EVPLIRVNAA RVLRNLCIYS GHECFLDLRF IKTAAPTVLK 701: SITSGDNKLL EVMLGLAAQV FKFMSSEEAN IVLTDSGIKK QELANSLVSI LKKHDKPAIK VPRIRRFVIE LAIWMMEDDV ENVGMFRDLG MEKELVKVLE 801: TTAELENFDV FSGTVGVSRQ SRTVHWLAEL ALKMLEDEHS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)