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AT5G18980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.921
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G06210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGYSeggNOG:ENOG410ZV59EMBL:AY056248EMBL:CP002688
EnsemblPlants:AT5G18980EnsemblPlants:AT5G18980.1entrez:832016Gene3D:1.25.10.10
GeneID:832016GO:GO:0016021Gramene:AT5G18980.1hmmpanther:PTHR33115
hmmpanther:PTHR33115:SF3HOGENOM:HOG000239728InterPro:IPR000225InterPro:IPR011989
InterPro:IPR016024KEGG:ath:AT5G18980OMA:RRWRISWPfscan:PS50176
PhylomeDB:Q93ZV0PROSITE:PS50176Proteomes:UP000006548RefSeq:NP_197399.1
SMART:SM00185SUPFAM:SSF48371TAIR:AT5G18980TMHMM:TMhelix
UniGene:At.26350UniProt:Q93ZV0
Coordinates (TAIR10) chr5:-:6334944..6337943
Molecular Weight (calculated) 93778.10 Da
IEP (calculated) 7.17
GRAVY (calculated) -0.09
Length 835 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSRKFEEDE DRSIRLQVSE LQKLEEAIGS TDTVFDLRSS IEKGDSGETA DAASISSATA FRRKSTVPAP EKKLTLFALQ LAILEKTATG IGTLGFIWAT
101: VVLLGGFAIT LDGSDFWFIT IILLIEGARI FSRSHELEWQ HQATWTVAGV GISSFRALRS SSASLFKNLK RISDSIFKPR SREATARDCV VPETTLETWK
201: NSDVPLLPYA RWFFISSTVS RLLYWLQLLS ATACVALSSY KLIRHNYGDV HKGDTDKRNR QSALNIFYSL AFAEALLFLV EKVYWEWQVS VCNLLENVTR
301: ECEFGVSGLV SIKRFFYDSY SKCVNGSIFD GLKMDIVSFG MELLNSNSSD EQLIGVRILR QFSVTERYSE DTLEKIGINF PVIERLVEML NWKDLQEEEI
401: RRSAAEILSK LAGKKQNSLR VAGISGAMES ISSLLENTRS SGEAPDEIGE KKVFHDHNLH YDFWRFNNLG LLILKKLAKD HDNCGKLGNT RGLLPKIIDF
501: THADENLLRD ENADIARSRV LTLKRSLQLV KMLASTTGNT GKCLRREISE IVFTVSNVRD VLKHGARYPK LQKLGIGILT NLALEAEARE RIGGTGGVLK
601: ELFNIFFKRE TRGDEGNEGC VRIAAGEAIA MLVLESKSNC LHVLRLGVMG RLVEALEVPS IRVNAARVLR NMCLYSGDEC FHDLKFVKAA APTVLKSITS
701: EDNKLQEVMV GLAAQVFRFM SSKESSYVFM YSGIKRQELA NSLVSILKKN DKPAIKVPRI RRFVIELAIW MMEDDELEDN VALFREMGLE KELEKVLETT
801: AELENFDVFS GTVGLSRHSR TVHSLAELAL EILRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)