AT5G07890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myosin heavy chain-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61200.3); Has 43004 Blast hits to 25312 proteins in 1567 species: Archae - 608; Bacteria - 4434; Metazoa - 22456; Fungi - 2945; Plants - 1841; Viruses - 100; Other Eukaryotes - 10620 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2517718..2519493 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 47556.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.60 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||
| Length | 409 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSSGSFSG SSSSACSSRS DCENSFDVED LLQIGTTRRE LRKQKDLLRE SQPHSIELVR RLELHTKSLS ESRLEDTARI QMMEKELLNC YKEIDYLRDQ 101: LIFRSKEVNY LNEHLHDLEF KLAESRNLEE EVNSLRDELC MSKSEHLLLL QELESKEIEL QCSSLTLEKL EETISSLTLE SLCEIESMKL DITALEQALF 201: DAMKIQEESI QEKDQLKGII EESQFQSQRA KENVKYIEKQ NEDLREKFTA SEKSIKDFFQ STKERLESED EQPLNAMCFF AELSHVLPVS NEVRNCFDAI 301: MKKLELSQNV NLIDKVEGMG KQIHQHEDVV KQLKEELKQE KLKAKEEAED LTQEMAELRY KMTCLLDEER NRRVCIEQAS LQRISELEAQ IKRDVKKPAS 401: NEMLPLPGL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)