AT1G77220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF300) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF300); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT4G38360.2); Has 852 Blast hits to 850 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 289; Fungi - 195; Plants - 246; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29013232..29015530 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55381.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.58 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.10 | ||||||||||||||||||||||||||||||||||||||||
| Length | 484 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEWRGILCSL LFIVSVGESS SRFGIMWHPN LGVDSGQYLT WPILSASVFV VIAILLPMYL IFEHLASYNQ PEEQKFLIGL ILMVPVYAVE SFLSLVNSEA 101: AFNCEVIRDC YEAFALYCFE RYLIACLDGE ERTIEFMEQQ TVITQSTPLL EGTCSYGVVE HPFPMNCFVK DWSLGPQFYH AVKIGIVQYM ILKMICALLA 201: MILEAFGVYG EGKFAWNYGY PYLAVVLNFS QTWALYCLVQ FYNVIKDKLA PIKPLAKFLT FKSIVFLTWW QGIIVAFLFS MGLVKGSLAK ELKTRIQDYI 301: ICIEMGIAAV VHLYVFPAAP YKRGERCVRN VAVMSDYASI DVPPDPEEVK DSERTTRTRY GRHDDREKRL NFPQSVRDVV LGSGEIIVDD MRFTVSHVVE 401: PVERGIAKIN RTFHQISENV KRFEQQKKTT KDDSYVIPLN QWAKEFSDVH ENLYDGGSVS DSGLGSTNRH HQSRVSGLWT RMRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)