suba logo
AT5G45310.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.621
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZIMeggNOG:ENOG41128MXEMBL:AF375430EMBL:AY060535
EMBL:CP002688EnsemblPlants:AT5G45310EnsemblPlants:AT5G45310.1entrez:834567
GeneID:834567GO:GO:0016021Gramene:AT5G45310.1hmmpanther:PTHR36073
hmmpanther:PTHR36073:SF1HOGENOM:HOG000151185KEGG:ath:AT5G45310ncoils:Coil
OMA:LLCCEAMPhylomeDB:Q94JR2Proteomes:UP000006548RefSeq:NP_568641.1
TAIR:AT5G45310TMHMM:TMhelixUniGene:At.27375UniProt:Q94JR2
Coordinates (TAIR10) chr5:-:18359373..18360796
Molecular Weight (calculated) 39801.60 Da
IEP (calculated) 6.79
GRAVY (calculated) 0.09
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLGGLISGL VSSSLYLMTR PFFFCIYACV FCLRTALVTT FVSTDMVTSA IWFNLSMLWR AVRGSIWGSV LLFTFPIRFF ASIPRERLLE QSIYDLRYEL
101: ESLEWNRKEI EKNLREAIKE YRIMEQDLDE LEDEHDEAIS KIEKLEAELQ ELKEENLQLM EVNGKDYRSK KGKVKPSEEP SEIRSIHKPK NIPYASKGKA
201: EFTSVKSPLY PFAKSTIPKD EELTPRVLGL EKNIAVSRSV FSAMLALVVG IVMYEAKEQE LCTPLIGALF TVVGISLKSV VQFFSTVKNK PALDAVALMS
301: LNWFIVGTLT YPTLPRVARI VVPRVFNTVG SVFALLHGGS LPSPPEFVNY VG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)