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AT2G29300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.842
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29320.1); Has 115593 Blast hits to 115382 proteins in 3526 species: Archae - 976; Bacteria - 76632; Metazoa - 4641; Fungi - 5649; Plants - 2506; Viruses - 5; Other Eukaryotes - 25184 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G29300-MONOMERBioCyc:ARA:GQT-2491-MONOMEREC:1.1.1.-eggNOG:COG1028
eggNOG:KOG0725EMBL:AC004561EMBL:AY072384EMBL:BT000135
EMBL:CP002685EnsemblPlants:AT2G29300EnsemblPlants:AT2G29300.1entrez:817479
ExpressionAtlas:Q42182Gene3D:3.40.50.720GeneID:817479Genevisible:Q42182
GO:GO:0016491Gramene:AT2G29300.1hmmpanther:PTHR24322hmmpanther:PTHR24322:SF623
InterPro:IPR002347InterPro:IPR016040PANTHER:PTHR24322PaxDb:Q42182
Pfam:PF00106Pfam:Q42182PhylomeDB:Q42182PIR:F84694
PRIDE:Q42182PRINTS:PR00080PRINTS:PR00081PRO:PR:Q42182
ProteinModelPortal:Q42182Proteomes:UP000006548RefSeq:NP_180491.1SMR:Q42182
STRING:3702.AT2G29300.2SUPFAM:SSF51735TAIR:AT2G29300UniGene:At.38494
UniProt:Q42182
Coordinates (TAIR10) chr2:+:12588214..12589372
Molecular Weight (calculated) 28257.80 Da
IEP (calculated) 6.89
GRAVY (calculated) 0.09
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKRWSLQGM TALVTGAASG IGYAIVEELA GFGARIHVCD ISETLLNQSL REWEKKGFQV SGSVCDVTSR PEREKLMQTV SSLFDGKLNI LVNNVGVLRA
101: KPTTEYVADD FTFHISTNLE AAYHFCQLSH PLLKTSGYGS IVFLSSVSGV VSITDCGSLY GLTKGALNQL ARNLACEWAK DGIRANAVAP NVVKTAQSQF
201: FLQDVSKKEG LFSRTPLGRS GEPNEVASLV VFLCLPAASY ITGQTICIDG GLTVYGFSSQ PQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)