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AT1G62510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, cotyledon, leaf whorl, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G12490.1); Has 25891 Blast hits to 3864 proteins in 588 species: Archae - 46; Bacteria - 7812; Metazoa - 1674; Fungi - 617; Plants - 4225; Viruses - 1248; Other Eukaryotes - 10269 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1NAeggNOG:ENOG410YRRTEMBL:AC005698EMBL:AK220631
EMBL:AK221810EMBL:AK221906EMBL:AK229824EMBL:AK230395
EMBL:BT010488EMBL:CP002684EnsemblPlants:AT1G62510EnsemblPlants:AT1G62510.1
entrez:842548GeneID:842548Gramene:AT1G62510.1hmmpanther:PTHR31731
HOGENOM:HOG000237797InterPro:IPR016140InterPro:IPR027923KEGG:ath:AT1G62510
OMA:FCTTISAPfam:PF14547Pfscan:PS51257PhylomeDB:Q9SXE6
PIR:B96651Proteomes:UP000006548RefSeq:NP_176440.1SMART:SM00499
STRING:3702.AT1G62510.1SUPFAM:SSF47699TAIR:AT1G62510TMHMM:TMhelix
UniGene:At.21816UniProt:Q9SXE6
Coordinates (TAIR10) chr1:-:23136632..23137081
Molecular Weight (calculated) 15619.60 Da
IEP (calculated) 9.88
GRAVY (calculated) 0.20
Length 149 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRTTKSLA LFLILNFLFF TTISACGNCG CPSPKPKHKP SPSPKPKPNP KPKPTPHPSP SPAIAKCPRD ALKLGVCANV LNGLLNVTLG KPPVEPCCTL
101: IQGLADLEAA ACLCTALKAN ILGINLNIPL SLSLLLNVCS KKVPRGFQC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)