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AT2G05540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycine-rich protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycine-rich protein family; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein 3 (TAIR:AT2G05520.4); Has 20980 Blast hits to 7546 proteins in 779 species: Archae - 6; Bacteria - 3254; Metazoa - 9284; Fungi - 1649; Plants - 4555; Viruses - 118; Other Eukaryotes - 2114 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVV6eggNOG:ENOG41105J4EMBL:AC006220EMBL:AY050337
EMBL:AY052202EMBL:AY094047EMBL:CP002685EnsemblPlants:AT2G05540
EnsemblPlants:AT2G05540.1entrez:815103GeneID:815103Gramene:AT2G05540.1
hmmpanther:PTHR33980HOGENOM:HOG000097838InterPro:IPR010800KEGG:ath:AT2G05540
ncoils:CoilOMA:QTEQFGGPfam:PF07172PIR:G84469
Proteomes:UP000006548RefSeq:NP_178622.1STRING:3702.AT2G05540.1TAIR:AT2G05540
UniGene:At.203UniGene:At.21406UniProt:Q9SL13
Coordinates (TAIR10) chr2:+:2033265..2033978
Molecular Weight (calculated) 14093.40 Da
IEP (calculated) 8.55
GRAVY (calculated) -0.62
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKALLFLS LIVVLLIASE VVARDLAEKS AEQKNNERDE VKQTEQFGGF PGGGYGGFPG GGYGGNPGGG YGNRGGGYRN RDGGYGNRGG GYGNRGGGYC
101: RYGCCYRGYY GGCFRCCAYA GQAVQTQPQS TEPGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)