AT2G05380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycine-rich protein 3 short isoform | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
glycine-rich protein 3 short isoform (GRP3S) mRNA, complete | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glycine-rich protein 3 short isoform (GRP3S); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein 3 (TAIR:AT2G05520.6); Has 24661 Blast hits to 8473 proteins in 834 species: Archae - 8; Bacteria - 5428; Metazoa - 9799; Fungi - 1363; Plants - 5177; Viruses - 364; Other Eukaryotes - 2522 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:1966851..1967820 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 11586.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.13 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||
| Length | 116 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASKTLLLLG LFAFLFIVSE MAAAGTVKSE SEETVKPEQH GGGFGDNGGG RYQGGGGHGG HGGGGYQGGG GRYQGGGGRQ GGGGSYCRHG CCYKGYHGCS 101: RCCSYAGEAV QTQSGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)