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AT5G61520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G34580.1); Has 24946 Blast hits to 24488 proteins in 1831 species: Archae - 380; Bacteria - 10823; Metazoa - 3430; Fungi - 6555; Plants - 2609; Viruses - 0; Other Eukaryotes - 1149 (source: NCBI BLink).
Protein Annotations
BioGrid:21517eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AB012239
EMBL:AJ002399EMBL:AY128303EMBL:BT000560EMBL:CP002688
EnsemblPlants:AT5G61520EnsemblPlants:AT5G61520.1entrez:836273ExpressionAtlas:Q8L7R8
GeneID:836273Genevisible:Q8L7R8GO:GO:0008643GO:GO:0015293
GO:GO:0016021GO:GO:0022891hmmpanther:PTHR23500hmmpanther:PTHR23500:SF30
HOGENOM:HOG000202867InParanoid:Q8L7R8InterPro:IPR003663InterPro:IPR005828
InterPro:IPR005829InterPro:IPR020846OMA:SSVTRSWPaxDb:Q8L7R8
Pfam:PF00083Pfam:Q8L7R8Pfscan:PS50850PhylomeDB:Q8L7R8
PRIDE:Q8L7R8PRINTS:PR00171PRO:PR:Q8L7R8PROSITE:PS00216
PROSITE:PS00217PROSITE:PS50850ProteinModelPortal:Q8L7R8Proteomes:UP000006548
RefSeq:NP_200960.2scanprosite:PS00216scanprosite:PS00217SMR:Q8L7R8
STRING:3702.AT5G61520.1SUPFAM:SSF103473TAIR:AT5G61520TIGRfam:TIGR00879
TIGRFAMs:TIGR00879TMHMM:TMhelixUniGene:At.19760UniProt:B9DGV5
UniProt:Q8L7R8
Coordinates (TAIR10) chr5:-:24739358..24741175
Molecular Weight (calculated) 55870.70 Da
IEP (calculated) 9.67
GRAVY (calculated) 0.45
Length 514 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAEEARKEA MAKSVSGGKI TYFVVASCVM AAMGGVIFGY DIGVSGGVMS MGPFLKRFFP KVYKLQEEDR RRRGNSNNHY CLFNSQLLTS FTSSLYVSGL
101: IATLLASSVT RSWGRKPSIF LGGVSFLAGA ALGGSAQNVA MLIIARLLLG VGVGFANQSV PLYLSEMAPA KYRGAISNGF QLCIGIGFLS ANVINYETQN
201: IKHGWRISLA TAAIPASILT LGSLFLPETP NSIIQTTGDV HKTELMLRRV RGTNDVQDEL TDLVEASSGS DTDSNAFLKL LQRKYRPELV MALVIPFFQQ
301: VTGINVVAFY APVLYRTVGF GESGSLMSTL VTGIVGTSST LLSMLVVDRI GRKTLFLIGG LQMLVSQVTI GVIVMVADVH DGVIKEGYGY AVVVLVCVYV
401: AGFGWSWGPL GWLVPSEIFP LEIRSVAQSV TVAVSFVFTF AVAQSAPPML CKFRAGIFFF YGGWLVVMTV AVQLFLPETK NVPIEKVVGL WEKHWFWRRM
501: TSKRDIQETT ILSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)