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AT2G25080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutathione peroxidase 1
Curator
Summary (TAIR10)
Encodes glutathione peroxidase.
Computational
Description (TAIR10)
glutathione peroxidase 1 (GPX1); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: glutathione peroxidase 7 (TAIR:AT4G31870.1); Has 7896 Blast hits to 7895 proteins in 1765 species: Archae - 2; Bacteria - 4003; Metazoa - 799; Fungi - 210; Plants - 390; Viruses - 8; Other Eukaryotes - 2484 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G25080-MONOMEREC:1.11.1.12eggNOG:COG0386eggNOG:KOG1651
EMBL:AJ000469EMBL:AY035153EMBL:AY063024EMBL:CP002685
EMBL:X89866EnsemblPlants:AT2G25080EnsemblPlants:AT2G25080.1entrez:817046
Gene3D:3.40.30.10GeneID:817046Genevisible:P52032GO:GO:0004602
GO:GO:0006979GO:GO:0009507GO:GO:0009535GO:GO:0009570
GO:GO:0009941GO:GO:0047066Gramene:AT2G25080.1gramene_pathway:1.11.1.9
gramene_pathway:PWY-4081hmmpanther:PTHR11592hmmpanther:PTHR11592:SF11HOGENOM:HOG000277054
InParanoid:P52032InterPro:IPR000889InterPro:IPR012336InterPro:IPR029759
InterPro:IPR029760iPTMnet:P52032KEGG:ath:AT2G25080KO:K00432
OMA:QAFCELNPANTHER:PTHR11592PaxDb:P52032PeroxiBase:2499
Pfam:P52032Pfam:PF00255Pfscan:PS51355PhylomeDB:P52032
PIR:A84644PIR:S71250PRIDE:P52032PRINTS:PR01011
PRO:PR:P52032PROSITE:PS00460PROSITE:PS00763PROSITE:PS51355
ProteinModelPortal:P52032Proteomes:UP000006548Reactome:R-ATH-2142712RefSeq:NP_180080.1
scanprosite:PS00460scanprosite:PS00763SMR:P52032STRING:3702.AT2G25080.1
SUPFAM:SSF52833TAIR:AT2G25080tair10-symbols:ATGPX1tair10-symbols:GPX1
UniGene:At.24670UniProt:P52032
Coordinates (TAIR10) chr2:+:10668134..10669828
Molecular Weight (calculated) 26017.10 Da
IEP (calculated) 9.94
GRAVY (calculated) -0.17
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSMTTSSSS YGTFSTVVNS SRPNSSATFL VPSLKFSTGI SNFANLSNGF SLKSPINPGF LFKSRPFTVQ ARAAAEKTVH DFTVKDIDGK DVALNKFKGK
101: VMLIVNVASR CGLTSSNYSE LSHLYEKYKT QGFEILAFPC NQFGFQEPGS NSEIKQFACT RFKAEFPIFD KVDVNGPSTA PIYEFLKSNA GGFLGGLIKW
201: NFEKFLIDKK GKVVERYPPT TSPFQIEKDI QKLLAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)