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AT2G18050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : histone H1-3
Curator
Summary (TAIR10)
encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.
Computational
Description (TAIR10)
histone H1-3 (HIS1-3); FUNCTIONS IN: DNA binding, nucleosomal DNA binding; INVOLVED IN: response to water deprivation, nucleosome assembly, response to abscisic acid stimulus; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT2G30620.1); Has 2047 Blast hits to 1827 proteins in 244 species: Archae - 1; Bacteria - 8; Metazoa - 1135; Fungi - 76; Plants - 531; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1R8eggNOG:ENOG410XWIMEMBL:AC006201EMBL:AY045797
EMBL:AY079414EMBL:AY084603EMBL:CP002685EMBL:U72241
EMBL:U73781EnsemblPlants:AT2G18050EnsemblPlants:AT2G18050.1entrez:816317
ExpressionAtlas:P94109Gene3D:1.10.10.10GeneID:816317GO:GO:0000786
GO:GO:0005634GO:GO:0006334GO:GO:0009414GO:GO:0031492
Gramene:AT2G18050.1hmmpanther:PTHR11467hmmpanther:PTHR11467:SF50HOGENOM:HOG000241672
InterPro:IPR005818InterPro:IPR005819InterPro:IPR011991KEGG:ath:AT2G18050
KO:K11275OMA:GCEAKMAPfam:PF00538Pfscan:PS51504
PhylomeDB:P94109PIR:F84559PRINTS:PR00624PROSITE:PS51504
Proteomes:UP000006548RefSeq:NP_179396.1SMART:SM00526SMR:P94109
STRING:3702.AT2G18050.1SUPFAM:SSF46785TAIR:AT2G18050tair10-symbols:HIS1-3
UniGene:At.24439UniProt:P94109
Coordinates (TAIR10) chr2:+:7846095..7846670
Molecular Weight (calculated) 19049.70 Da
IEP (calculated) 11.39
GRAVY (calculated) -1.17
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEDKILKKT PAAKKPRKPK TTTHPPYFQM IKEALMVLKE KNGSSPYAIA KKIEEKHKSL LPESFRKTLS LQLKNSVAKG KLVKIRASYK LSDTTKMITR
101: QQDKKNKKNM KQEDKEITKR TRSSSTRPKK TVSVNKQEKK RKVKKARQPK SIKSSVGKKK AMKASAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)