AT2G18050.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : histone H1-3 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
histone H1-3 (HIS1-3); FUNCTIONS IN: DNA binding, nucleosomal DNA binding; INVOLVED IN: response to water deprivation, nucleosome assembly, response to abscisic acid stimulus; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT2G30620.1); Has 2047 Blast hits to 1827 proteins in 244 species: Archae - 1; Bacteria - 8; Metazoa - 1135; Fungi - 76; Plants - 531; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:+:7846095..7846670 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 19049.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 11.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -1.17 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 167 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAEDKILKKT PAAKKPRKPK TTTHPPYFQM IKEALMVLKE KNGSSPYAIA KKIEEKHKSL LPESFRKTLS LQLKNSVAKG KLVKIRASYK LSDTTKMITR 101: QQDKKNKKNM KQEDKEITKR TRSSSTRPKK TVSVNKQEKK RKVKKARQPK SIKSSVGKKK AMKASAA |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)