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AT2G17900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SET domain group 37
Curator
Summary (TAIR10)
Homology Subgroup S-ET - Protein containing an interrupted SET domain.
Computational
Description (TAIR10)
SET domain group 37 (SDG37); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: histone-lysine N-methyltransferase ATXR2 (TAIR:AT3G21820.1); Has 2797 Blast hits to 2717 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 1313; Fungi - 588; Plants - 382; Viruses - 7; Other Eukaryotes - 507 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G17900-MONOMEREC:2.1.1.43eggNOG:COG2940eggNOG:KOG2084
EMBL:BT030467EMBL:CP002685EnsemblPlants:AT2G17900EnsemblPlants:AT2G17900.1
entrez:816300GeneID:816300Genevisible:Q7XJS0GO:GO:0005634
GO:GO:0005694GO:GO:0018024GO:GO:0046872Gramene:AT2G17900.1
HOGENOM:HOG000005683InParanoid:Q7XJS0InterPro:IPR001214InterPro:IPR002893
KEGG:ath:AT2G17900KO:K11426ncoils:CoilOMA:HMKLGKI
PaxDb:Q7XJS0Pfam:PF00856Pfam:PF01753Pfam:Q7XJS0
Pfscan:PS50280Pfscan:PS50865PhylomeDB:Q7XJS0PIR:T00834
PRIDE:Q7XJS0PRO:PR:Q7XJS0PROSITE:PS01360PROSITE:PS50280
PROSITE:PS50865ProteinModelPortal:Q7XJS0Proteomes:UP000006548RefSeq:NP_849969.1
scanprosite:PS01360SMART:SM00317SMR:Q7XJS0STRING:3702.AT2G17900.1
SUPFAM:SSF82199TAIR:AT2G17900tair10-symbols:SDG37UniGene:At.52792
UniProt:Q7XJS0
Coordinates (TAIR10) chr2:-:7773420..7776675
Molecular Weight (calculated) 54830.60 Da
IEP (calculated) 8.36
GRAVY (calculated) -0.26
Length 480 amino acids
Sequence (TAIR10)
(BLAST)
001: MADLQRFLQD RCLGVSNLPQ KGRSLFTARD FRPGEVILSQ KPYICVPNNT SSESRCDGCF KTNNLKKCSA CQVVWYCGSS CQKSEWKLHR DECKALTRLE
101: KEKRKFVTPT IRLMVRLYIK RNLQNEKVLP ITTTDNYSLV EALVSHMSEI DEKQMLLYAQ MANLVNLILQ FPSVDLREIA ENFSKFSCNA HSICDSELRP
201: QGIGLFPLVS IINHSCSPNA VLVFEEQMAV VRAMDNISKD SEITISYIET AGSTLTRQKS LKEQYLFHCQ CARCSNFGKP HDIEESAILE GYRCANEKCT
301: GFLLRDPEEK GFVCQKCLLL RSKEEVKKLA SDLKTVSEKA PTSPSAEDKQ AAIELYKTIE KLQVKLYHSF SIPLMRTREK LLKMLMDVEI WREALNYCRL
401: IVPVYQRVYP ATHPLIGLQF YTQGKLEWLL GETKEAVSSL IKAFDILRIS HGISTPFMKE LSAKLEEARA EASYKQLALH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)