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AT5G03180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:AY054201EMBL:AY103311
EMBL:CP002688EnsemblPlants:AT5G03180EnsemblPlants:AT5G03180.1entrez:831897
ExpressionAtlas:Q940Q0Gene3D:3.30.40.10GeneID:831897GO:GO:0008270
GO:GO:0016021Gramene:AT5G03180.1hmmpanther:PTHR23012hmmpanther:PTHR23012:SF92
HOGENOM:HOG000240594IntAct:Q940Q0InterPro:IPR011016InterPro:IPR013083
InterPro:IPR033275KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-
PANTHER:PTHR23012Pfam:PF12906Pfscan:PS51292PhylomeDB:Q940Q0
PROSITE:PS51292Proteomes:UP000006548RefSeq:NP_568111.1SMART:SM00744
SMR:Q940Q0STRING:3702.AT5G03180.2SUPFAM:SSF57850TAIR:AT5G03180
TMHMM:TMhelixUniGene:At.25227unipathway:UPA00143UniProt:Q940Q0
Coordinates (TAIR10) chr5:-:754201..756411
Molecular Weight (calculated) 52241.00 Da
IEP (calculated) 8.34
GRAVY (calculated) -0.28
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMDDKDKYR EVVEHWSCEG TSPALMVGDS TEITEMLSPS QHQRWRGLVL DIQSREAHGD FLRANGSLIH SPVSKRFKFS PMSSPRTGRR VGSMSPSSSR
101: NRTNQKNFKN RNHSADIEEG VVSPLGDGSD KSYIPRTWSL TNLLAPRKSK KTESFITHSN PESMNGRYAV EVDPVTSMKG ERLLPIRRTR SVPTFFNKDG
201: SVKPSSVFRV IPTPSRGDEK RLEMTQASKL NENDDGGEDV PEEEAVCRIC MVEMEEDEEA FKMECMCKGE LALAHKTCTI KWFTIKGNIT CDVCKQEVRN
301: LPVTLLRVQD SQNRSRAARD IEISRFNNVW QDIPILVIVS MLAYFCFLEQ LLIIDMKSSA VAIALPFSCI IGLLASMIST TMVKKNYVWI YATVQFGFVV
401: LFAQLFYRVV RFDVKQPVMC IVLATMIGFG LTMTGTTAIN EYLKWRRSNS HLPEEPASTQ VV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)