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AT5G48810.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17322552 (2007): endoplasmic reticulum
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome B5 isoform D
Curator
Summary (TAIR10)
Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation.
Computational
Description (TAIR10)
cytochrome B5 isoform D (CB5-D); FUNCTIONS IN: heme binding; INVOLVED IN: defense response to bacterium; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform B (TAIR:AT2G32720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20185eggNOG:COG5274eggNOG:KOG0537EMBL:AB007802
EMBL:AB012242EMBL:AF370256EMBL:AY063073EMBL:AY086738
EMBL:CP002688EnsemblPlants:AT5G48810EnsemblPlants:AT5G48810.1entrez:834939
Gene3D:3.10.120.10GeneID:834939Genevisible:Q9ZWT2GO:GO:0005783
GO:GO:0005789GO:GO:0016021GO:GO:0020037GO:GO:0042742
GO:GO:0046872GO:GO:0055114Gramene:AT5G48810.1hmmpanther:PTHR19359
hmmpanther:PTHR19359:SF26HOGENOM:HOG000039853InParanoid:Q9ZWT2IntAct:Q9ZWT2
InterPro:IPR001199InterPro:IPR018506KEGG:ath:AT5G48810OMA:GIRYYTK
PaxDb:Q9ZWT2Pfam:PF00173Pfam:Q9ZWT2Pfscan:PS50255
PhylomeDB:Q9ZWT2PIR:T52468PRIDE:Q9ZWT2PRINTS:PR00363
PRO:PR:Q9ZWT2PROSITE:PS00191PROSITE:PS50255ProteinModelPortal:Q9ZWT2
Proteomes:UP000006548Reactome:R-ATH-196836RefSeq:NP_199692.1scanprosite:PS00191
SMART:SM01117SMR:Q9ZWT2STRING:3702.AT5G48810.1SUPFAM:SSF55856
TAIR:AT5G48810tair10-symbols:ATB5-Btair10-symbols:ATCB5-Dtair10-symbols:B5 #3
tair10-symbols:CB5-DTMHMM:TMhelixUniGene:At.23051UniGene:At.29823
UniProt:Q9ZWT2
Coordinates (TAIR10) chr5:-:19789249..19790180
Molecular Weight (calculated) 15097.90 Da
IEP (calculated) 4.70
GRAVY (calculated) -0.07
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGDGKVFTL SEVSQHSSAK DCWIVIDGKV YDVTKFLDDH PGGDEVILTS TGKDATDDFE DVGHSSTAKA MLDEYYVGDI DTATVPVKAK FVPPTSTKAV
101: ATQDKSSDFV IKLLQFLVPL LILGLAFGIR YYTKTKAPSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)