AT1G31050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G61660.3); Has 358 Blast hits to 358 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11075720..11079140 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48981.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.87 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||||||||||||||
| Length | 434 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLREECTPSS SWWEDVQHHH NDHANSISST SFYHKSSNNN SHANASCEED NLSVSTVRAS NRLDLTAESS NHHSLSASNQ PASSSDELLR DHVVSSHNHL 101: WSLAFLPGRS LGDQMMDHHH HIASRNSSTT SELPSFEPAC HNGNGNGWIY DPNQVRYDQS SDQRLSKLTD LVGKHWSIAP PNNPDMNHNL HHHFDHDHSQ 201: NDDISMYRQA LEVKNEEDLC YNNGSSGGGS LFHDPIESSR SFLDIRLSRP LTDINPSFKP CFKALNVSEF NKKEHQTASL AAVRLGTTNA GKKKRCEEIS 301: DEVSKKAKCS EGSTLSPEKE LPKAKLRDKI TTLQQIVSPF GKTDTASVLQ EAITYINFYQ EQVKLLSTPY MKNSSMKDPW GGWDREDHNK RGPKHLDLRS 401: RGLCLVPISY TPIAYRDNSA TDYWNPTYRG SLYR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)