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AT4G03110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding protein-defense related 1
Curator
Summary (TAIR10)
Encodes a putative RNA-binding protein that is located in the cytoplasm and is involved in the hypersensitive response and positively regulates salicylic acid-mediated immunity.
Computational
Description (TAIR10)
RNA-binding protein-defense related 1 (RBP-DR1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: plant-type hypersensitive response, positive regulation of salicylic acid mediated signaling pathway; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G03457.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNTWeggNOG:KOG0144EMBL:AC005275EMBL:AF069442
EMBL:AK316961EMBL:AL161496EMBL:AY065261EMBL:AY084669
EMBL:CP002687EnsemblPlants:AT4G03110EnsemblPlants:AT4G03110.1EnsemblPlants:AT4G03110.2
entrez:828090ExpressionAtlas:Q8LFS6Gene3D:3.30.70.330GeneID:828090
Genevisible:Q8LFS6GO:GO:0000166GO:GO:0003729GO:GO:0005737
GO:GO:0006402GO:GO:0009626GO:GO:0009908GO:GO:0030529
GO:GO:0080151GO:GO:2000028Gramene:AT4G03110.2hmmpanther:PTHR24012
hmmpanther:PTHR24012:SF414HOGENOM:HOG000004754InterPro:IPR000504InterPro:IPR002343
InterPro:IPR012677KEGG:ath:AT4G03110KO:K13207OMA:RINTEHT
PaxDb:Q8LFS6Pfam:PF00076Pfam:Q8LFS6Pfscan:PS50102
PhylomeDB:Q8LFS6PIR:T01382PRIDE:Q8LFS6PRINTS:PR00961
PRO:PR:Q8LFS6PROSITE:PS50102ProteinModelPortal:Q8LFS6Proteomes:UP000006548
RefSeq:NP_567249.1RefSeq:NP_849294.1SMART:SM00360SMR:Q8LFS6
STRING:3702.AT4G03110.1SUPFAM:SSF54928TAIR:AT4G03110tair10-symbols:AtRBP-DR1
tair10-symbols:RBP-DR1UniGene:At.28541UniProt:Q8LFS6
Coordinates (TAIR10) chr4:-:1376612..1379275
Molecular Weight (calculated) 48201.60 Da
IEP (calculated) 9.04
GRAVY (calculated) -0.45
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEAKEENRE KNEEEESVKL FVGQIPKHMS ESQLLTLFQE FAVVDEVNII KDKITRASRG CCFLLCPSRE EADKLVNACH NKKTLPGANS LLQVKYADGE
101: LERLEHKLFV GMLPKNVSEA EVQSLFSKYG TIKDLQILRG AQQTSKGCAF LKYETKEQAV SAMESINGKH KMEGSTVPLV VKWADTERER HTRRLQKAQS
201: HIARLGNGDP TNPSLFGALP MGYVPPYNGY GYHQPPGTYG YMLPPIQNQA AFSNMIAQPN QGNNNALQGT SPDSVPPRLA RRNFPMPPGN YMGSGYPAMR
301: GHPFPFAYPR GIVSPRPLSS SPGSISPGMS TPLGIGLSSV VQTEGPEGAN LFIYNIPREF GDQELAAAFQ SFGIVLSAKV FVDKATGVSK CFGFVSYDSQ
401: AAAQNAIDMM NGRHLGGKKL KVQLKRDSNN GQPSSNPSLI S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)