AT3G18370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.908 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2 domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ATSYTF; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G11100.1); Has 5534 Blast hits to 4008 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 3360; Fungi - 437; Plants - 1305; Viruses - 0; Other Eukaryotes - 432 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6306362..6310256 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91137.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.17 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||
| Length | 815 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRRIKRKGL INTEAAREFI NHLVAERHSL LLLVPLVLAF WAIERWVFAF SNWVPLVVAV WASLQYGSYQ RALLAEDLTK KWRQTVFNAS TITPLEHCQW 101: LNKLLSEIWL NYMNKKLSLR FSSMVEKRLR QRRSRLIENI QLLEFSLGSC PPLLGLHGTC WSKSGEQKIM RLDFNWDTTD LSILLQAKLS MPFNRTARIV 201: VNSLCIKGDI LIRPILEGRA LLYSFVSNPE VRIGVAFGGG GGQSLPATEL PGVSSWLVKI LTETLNKKMV EPRRGCFSLP ATDLHKTAIG GIIYVTVVSG 301: NNLNRRILRG SPSKSSEIGE GSSGNSSSKP VQTFVEVELE QLSRRTEMKS GPNPAYQSTF NMILHDNTGT LKFNLYENNP GSVRYDSLAS CEVKMKYVGD 401: DSTMFWAVGS DNGVIAKHAE FCGQEIEMVV PFEGVSSGEL TVRLLLKEWH FSDGSHSLNS VNSSSLHSLD SSSALLSKTG RKIIVTVLAG KNLVSKDKSG 501: KCDASVKLQY GKIIQKTKIV NAAECVWNQK FEFEELAGEE YLKVKCYREE MLGTDNIGTA TLSLQGINNS EMHIWVPLED VNSGEIELLI EALDPEYSEA 601: DSSKGLIELV LVEARDLVAA DIRGTSDPYV RVQYGEKKQR TKVIYKTLQP KWNQTMEFPD DGSSLELHVK DYNTLLPTSS IGNCVVEYQG LKPNETADKW 701: IILQGVKHGE VHVRVTRKVT EIQRRASAGP GTPFNKALLL SNQMKQVMIK FQNLIDDGDL EGLAEALEEL ESLEDEQEQY LLQLQTEQSL LINKIKDLGK 801: EILNSSPAQA PSRDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)