AT5G42140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.950 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT1G76950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16837547..16841640 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116504.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.01 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1073 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFTRALLYVL QALIALKKGA QLLKYGRKGK PKFCPFRLSN DETSLIWISN GGEKRLKLAT VSKIVPGQRT AVFQRYLRPD KDYLSFSLIY SNRKRTLDLI 0101: CKDKVEAEVW IAGLKALISG QAGRSKIDGW SDGGLSIADS RDLTLSSPTN SSVCASRDFN IADSPYNSTN FPRTSRTENS VSSERSHVAS DSPNMLVRGT 0201: GSDAFRVSVS SVQSSSSHGS APDDCDALGD VYIWGEVLCE NVTKFGADKN IGYLGSRSDV LIPKPLESNV VLDVHHIACG VKHAALVSRQ GEVFTWGEAS 0301: GGRLGHGMGK DVTGPQLIES LAATSIDFVA CGEFHTCAVT MTGEIYTWGD GTHNAGLLGH GTDVSHWIPK RISGPLEGLQ IASVSCGPWH TALITSTGQL 0401: FTFGDGTFGV LGHGDKETVF YPREVESLSG LRTIAVACGV WHAAAIVEVI VTHSSSSVSS GKLFTWGDGD KSRLGHGDKE PRLKPTCVSA LIDHTFHRVA 0501: CGHSLTVGLT TSGKVYTMGS TVYGQLGNPN ADGKLPCLVE DKLTKDCVEE IACGAYHVAV LTSRNEVFTW GKGANGRLGH GDVEDRKAPT LVDALKERHV 0601: KNIACGSNFT AAICLHKWVS GTEQSQCSAC RQAFGFTRKR HNCYNCGLVH CHSCSSKKSL KAALAPNPGK PYRVCDSCHS KLSKVSEANI DSRKNVMPRL 0701: SGENKDRLDK TEIRLAKSGI PSNIDLIKQL DNRAARQGKK ADTFSLVRTS QTPLTQLKDA LTNVADLRRG PPKPAVTPSS SRPVSPFSRR SSPPRSVTPI 0801: PLNVGLGFST SIAESLKKTN ELLNQEVVRL RAQAESLRHR CEVQEFEVQK SVKKVQEAMS LAAEESAKSE AAKEVIKSLT AQVKDIAALL PPGAYEAETT 0901: RTANLLNGFE QNGFHFTNAN GQRQSRSDSM SDTSLASPLA MPARSMNGLW RNSQSPRNTD ASMGELLSEG VRISNGFSED GRNSRSSAAS ASNASQVEAE 1001: WIEQYEPGVY ITLLALGDGT RDLKRVRFSR RRFREQQAET WWSENRERVY EKYNIRGTDR SSVATSPISQ SQF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)