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AT1G50640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ethylene responsive element binding factor 3
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-3). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
Computational
Description (TAIR10)
ethylene responsive element binding factor 3 (ERF3); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response factor 7 (TAIR:AT3G20310.1); Has 5989 Blast hits to 5713 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 5972; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:26711eggNOG:ENOG410IZCZeggNOG:ENOG410YQNQEMBL:AB008105
EMBL:AC012561EMBL:AC079279EMBL:AK228091EMBL:BT025295
EMBL:CP002684EnsemblPlants:AT1G50640EnsemblPlants:AT1G50640.1entrez:841486
ExpressionAtlas:O80339Gene3D:3.30.730.10GeneID:841486Genevisible:O80339
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006952GO:GO:0009873GO:GO:0010105hmmpanther:PTHR31677
hmmpanther:PTHR31677:SF17HOGENOM:HOG000237624InParanoid:O80339IntAct:O80339
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT1G50640KO:K09286
OMA:DLHCTALPaxDb:O80339Pfam:O80339Pfam:PF00847
Pfscan:PS51032PhylomeDB:O80339PIR:T52011PRINTS:PR00367
PRO:PR:O80339PROSITE:PS51032ProteinModelPortal:O80339Proteomes:UP000006548
RefSeq:NP_175479.1SMART:SM00380SMR:O80339STRING:3702.AT1G50640.1
SUPFAM:SSF54171TAIR:AT1G50640tair10-symbols:ATERF3tair10-symbols:ERF3
UniGene:At.1645UniGene:At.71718UniProt:C0SV01UniProt:O80339
Coordinates (TAIR10) chr1:-:18757602..18758279
Molecular Weight (calculated) 25217.40 Da
IEP (calculated) 9.37
GRAVY (calculated) -0.78
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)