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AT3G18295.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1639)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1639); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G48770.1); Has 259 Blast hits to 258 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JEZPeggNOG:ENOG410ZN7QEMBL:AB026658EMBL:AP000414
EMBL:BT011209EMBL:BT012142EMBL:CP002686EnsemblPlants:AT3G18295
EnsemblPlants:AT3G18295.1entrez:821358GeneID:821358GO:GO:0009507
Gramene:AT3G18295.1hmmpanther:PTHR33130hmmpanther:PTHR33130:SF13HOGENOM:HOG000070906
InterPro:IPR012438KEGG:ath:AT3G18295OMA:QDFKAIRPfam:PF07797
PhylomeDB:Q9LS61Proteomes:UP000006548RefSeq:NP_188458.1TAIR:AT3G18295
UniGene:At.38577UniProt:Q9LS61
Coordinates (TAIR10) chr3:+:6281268..6282000
Molecular Weight (calculated) 24249.50 Da
IEP (calculated) 10.21
GRAVY (calculated) -0.93
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MELPPPPERS KRLHNFTLPY LRWGQQRFLR CVKLPHHNRS PSFPSSSSSP SPDHRSHNGG LSGELRLDLV YDANRPKLSV LGNGGDNNNG DVVAAARPWN
101: LRTRRAACNE PPGDDSTRII ESSSSLRRHE IGVKRGGSED GGDSQQNKNE KVKFSVSLLR EEIEQDFSAL IGKRPPRRPK KRPRLVQKQM NTLFPGLWLA
201: EEVTADSYDV PEAVET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)