suba logo
AT4G20880.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2); BEST Arabidopsis thaliana protein match is: ethylene-responsive nuclear protein -related (TAIR:AT5G44350.1); Has 2205 Blast hits to 1471 proteins in 187 species: Archae - 2; Bacteria - 107; Metazoa - 617; Fungi - 120; Plants - 79; Viruses - 12; Other Eukaryotes - 1268 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ8VeggNOG:ENOG410YYYWEMBL:AK118534EMBL:AL080282
EMBL:AL161553EMBL:CP002687EnsemblPlants:AT4G20880EnsemblPlants:AT4G20880.1
entrez:827836GeneID:827836GO:GO:0005634GO:GO:0016021
Gramene:AT4G20880.1hmmpanther:PTHR36381hmmpanther:PTHR36381:SF1KEGG:ath:AT4G20880
ncoils:CoilOMA:VEDSQCIPIR:T10630Proteomes:UP000006548
RefSeq:NP_193820.1TAIR:AT4G20880TMHMM:TMhelixUniGene:At.32688
UniGene:At.74105UniProt:Q9SUC4
Coordinates (TAIR10) chr4:-:11179389..11180606
Molecular Weight (calculated) 45670.40 Da
IEP (calculated) 8.46
GRAVY (calculated) -0.41
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLPWKKSKS SRISRFVSDF QQSPKHGGSL VVETGFPTSL IDLFVKNRDR LKKQSSKRNN KNNKAQTETR VLSPPPPHMS LQRRMSLPSK LDPALVTEDS
101: PLVRKIEETS VPEIIHEDDG GHRGGGGGGC VLIVVVFKVF MVAVLALSTK KLAVGITLSA FALLFLELAV ARVFTYLNLC PDAQIRIDSL IDKLIGKRHK
201: EKLEEEEEST STHDRRNNVY FEIIEEPREE IRVTPQSDSS SLEKAKLVVD EKKEMQTIRD VMFKTEKSKS AKLKSKIVKK IVPKKLRSYK KKKKMKNKEK
301: EEEEVELETE EEGSMTEVSS LYSDERIGSE ISERDDLSSN PPFLESCTEV EEEEETGPKE DLTKVIGLIV IVLVGLLCGK VFAIGLTLSW CLILRVFCCK
401: SQTSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)