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AT2G28910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CAX interacting protein 4
Curator
Summary (TAIR10)
Encodes a CAX-interacting protein (CXIP4). The gene product is located in the nucleus of GFP-CXIP4-expressing yeast cells. When transiently expressed in the tobacco leaves, GFP-CXIP4 locates to the nucleus as well as in discrete areas of the cytoplasm (which do not overlap with mitochondria).
Computational
Description (TAIR10)
CAX interacting protein 4 (CXIP4); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: positive regulation of calcium ion transport, response to zinc ion; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); Has 71192 Blast hits to 36424 proteins in 1643 species: Archae - 52; Bacteria - 6434; Metazoa - 32894; Fungi - 8707; Plants - 4806; Viruses - 452; Other Eukaryotes - 17847 (source: NCBI BLink).
Protein Annotations
BioGrid:2790eggNOG:ENOG41124J3eggNOG:KOG2985EMBL:AC005727
EMBL:AF428457EMBL:AY088773EMBL:AY142061EMBL:AY163162
EMBL:CP002685EnsemblPlants:AT2G28910EnsemblPlants:AT2G28910.1entrez:817440
GeneID:817440Genevisible:Q84Y18GO:GO:0003676GO:GO:0005634
GO:GO:0005737GO:GO:0008270Gramene:AT2G28910.1hmmpanther:PTHR31437
hmmpanther:PTHR31437:SF1HOGENOM:HOG000112115InParanoid:Q84Y18InterPro:IPR001878
iPTMnet:Q84Y18KEGG:ath:AT2G28910OMA:ESPPRHKPaxDb:Q84Y18
Pfam:PF13917Pfam:Q84Y18Pfscan:PS50158PIR:D84690
PRIDE:Q84Y18PRO:PR:Q84Y18PROSITE:PS50158ProteinModelPortal:Q84Y18
Proteomes:UP000006548RefSeq:NP_565678.1STRING:3702.AT2G28910.1TAIR:AT2G28910
tair10-symbols:CXIP4UniGene:At.24013UniGene:At.68079UniProt:Q84Y18
Coordinates (TAIR10) chr2:-:12415992..12416990
Molecular Weight (calculated) 37834.30 Da
IEP (calculated) 10.46
GRAVY (calculated) -1.69
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MPATAGRVRM PANNRVHSSA ALQTHGIWQS AIGYDPYAPT SKEEPKTTQQ KTEDPENSYA SFQGLLALAR ITGSNNDEAR GSCKKCGRVG HLTFQCRNFL
101: STKEDKEKDP GAIEAAVLSG LEKIRRGVGK GEVEEVSSEE EEESESSDSD VDSEMERIIA ERFGKKKGGS SVKKTSSVRK KKKRVSDESD SDSDSGDRKR
201: RRRSMKKRSS HKRRSLSESE DEEEGRSKRR KERRGRKRDE DDSDESEDED DRRVKRKSRK EKRRRRSRRN HSDDSDSESS EDDRRQKRRN KVAASSDSEA
301: NVSGDDVSRV GRGSSKRSEK KSRKRHHRKE RE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)