AT2G38800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant calmodulin-binding protein-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant calmodulin-binding protein-related; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT3G54570.1); Has 4321 Blast hits to 2381 proteins in 392 species: Archae - 26; Bacteria - 2334; Metazoa - 540; Fungi - 255; Plants - 198; Viruses - 28; Other Eukaryotes - 940 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16216999..16218837 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69028.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.59 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||
| Length | 612 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVQRKKTCLT IESSSNLQPE TRFGQEHLKN LGPEMMMMKR TKPRRKLKDN HVSSQSGKSQ ELPKHDLVVK VIGGSPNYMK GTSSSEARKE NKKKFNLSRN 101: QKNQTGSKHD SRYGVNKERS CNKSSSRNGR GLTKAPIFKR CSQRATCSST LKDSKFPEYL MLNHGETFDQ VNGTSVLKVC PYTYCSLNGH LHAAQYPPLK 201: SFISLRRQSL KSQKSVKMEA SEEEFVKMDD LEEKKEFENG NGGSCEVDID SQISETVSEG APRSETDSDD YSDSAEMVIE LKESCLEETL VDDSENEVQE 301: KANRDGDTYL LKESDLEETL VEDSMNQDEG NRDGDADHSG CFDSEVIGII KNSEADIVID ETLIDDSVKD FEDTTNIYGD ANEFGCFNSE VIDMMKNTEA 401: DTAIGETLVD ESMKEIQEKE NKDEDADESS CFVSELIDMI KNSAASDAIE DKDATGEETL KDKAEDCKEV SKGQTEVILM TEENAKVPFN RTRKPCKQEE 501: SGSTISWTII KCKKPVAETE DLREFNPREP NYLPAVMDED AEKVDLKHQD IDERRNSEDW MFDYALQRAV SKLAPARKRK VALLVEAFET VQPHGREPEQ 601: VLSYGRHLQA CN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)