AT2G20550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HSP40/DnaJ peptide-binding protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HSP40/DnaJ peptide-binding protein; FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G20560.1); Has 11261 Blast hits to 11178 proteins in 2681 species: Archae - 101; Bacteria - 6256; Metazoa - 1091; Fungi - 651; Plants - 711; Viruses - 2; Other Eukaryotes - 2449 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8846051..8847113 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30703.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.42 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||
| Length | 284 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSHPRNADDI FSEFFGVSRP SGPSGPRNAD DIYSEFFGVS SPSGPRNKDD IFSEFFEVSN PSGPRDKDDI SAEYFGVPSP SGSGSSGGRE GGGGGGGTMH 101: HGGARKAAPV EKKLPCSLED LYKGTTKKMK ISREIAGVFG KTTQVQEILT VDVKPGWKTG TKITFSEKGN EQPGVIPADL VFIIDEKPHP VFTREGNDLV 201: VTQKISVLEA FTGYTVNLTT LDGRRLTIPV NTVIHPEYVE VVPNEGMPLQ KDQAKKGNLR IKFNIKFPTT LTSEQKTGLK KLLG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)