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AT3G16640.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
  • PMID:18431481 (2008): plastid
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:14729914 (2004): plastid
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : translationally controlled tumor protein
Curator
Summary (TAIR10)
Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.
Computational
Description (TAIR10)
translationally controlled tumor protein (TCTP); INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Translationally controlled tumour protein (InterPro:IPR018105), Mss4/translationally controlled tumour-associated TCTP (InterPro:IPR011323), Translationally controlled tumour protein, conserved site (InterPro:IPR018103), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: Methionine sulfoxide reductase (MSS4-like) family protein (TAIR:AT3G05540.1); Has 867 Blast hits to 867 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 160; Plants - 158; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Protein Annotations
BioGrid:6250eggNOG:ENOG4111FVPeggNOG:KOG1727EMBL:AB022217
EMBL:AF215897EMBL:AF361815EMBL:AY045802EMBL:AY056065
EMBL:AY072337EMBL:AY079333EMBL:AY088605EMBL:AY114601
EMBL:CP002686EMBL:Z18387EnsemblPlants:AT3G16640EnsemblPlants:AT3G16640.1
entrez:820916Gene3D:2.170.150.10GeneID:820916Genevisible:P31265
GO:GO:0001558GO:GO:0005634GO:GO:0005774GO:GO:0005794
GO:GO:0005829GO:GO:0005886GO:GO:0007346GO:GO:0008017
GO:GO:0008283GO:GO:0009506GO:GO:0009507GO:GO:0009579
GO:GO:0009735GO:GO:0009791GO:GO:0009793GO:GO:0009819
GO:GO:0009860GO:GO:0010252GO:GO:0031117GO:GO:0040014
GO:GO:0042742GO:GO:0046686GO:GO:0048046GO:GO:0048364
GO:GO:0048527GO:GO:0048768GO:GO:0090333GO:GO:0090406
Gramene:AT3G16640.1HOGENOM:HOG000203361InParanoid:P31265IntAct:P31265
InterPro:IPR011057InterPro:IPR011323InterPro:IPR018103InterPro:IPR018105
KEGG:ath:AT3G16640OMA:WADGLKEPaxDb:P31265Pfam:P31265
Pfam:PF00838PhylomeDB:P31265PRIDE:P31265PRINTS:PR01653
PRO:PR:P31265PROSITE:PS01002PROSITE:PS01003ProteinModelPortal:P31265
Proteomes:UP000006548RefSeq:NP_188286.1scanprosite:PS01002scanprosite:PS01003
SMR:P31265STRING:3702.AT3G16640.1SUPFAM:SSF51316TAIR:AT3G16640
tair10-symbols:TCTPUniGene:At.34389UniGene:At.47256UniGene:At.74193
UniProt:P31265
Coordinates (TAIR10) chr3:-:5669709..5670729
Molecular Weight (calculated) 18911.30 Da
IEP (calculated) 4.26
GRAVY (calculated) -0.29
Length 168 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)