AT1G63980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : D111/G-patch domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); Has 18077 Blast hits to 9113 proteins in 508 species: Archae - 9; Bacteria - 1331; Metazoa - 6165; Fungi - 2709; Plants - 1373; Viruses - 248; Other Eukaryotes - 6242 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23740646..23743054 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43440.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.96 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.98 | ||||||||||||||||||||||||||||
| Length | 391 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAPEAPVKY VGICKDSAAF KLMKSMGWEE GEGLGKDKQG IKGYVRVTNK QDTSGVGLDK PNPWAFDTTQ FDNILKKLKV QAAPTKTSKN DDDSDKEDES 101: EDDAVKSEPA KLKTVAKVTR PQGRYKRREK GKLVNSYSSK DLEGILVKRT EDPSPAVCDI ADSMDIEIIS EDQDASIKEQ KIEEPSSNWW GFKSGFVSGG 201: LLGAKSGKKK LKASERKMFS ENDQENLYNM VQDKATAGKQ GLGIKDRPKK IAGVRYEGKK TSFDNSDDDD DDDDDDDEED EEEDEDESEA DDDDKDSVIE 301: SSLPAKRKHD EIIEPKIKLK NLCKQIVKKD AGKGGFMKLK QLKSLIDEQA PSVLSEFSSR KDAIAYLKLK LERSGKFVVE GKKISLVSSK K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)