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AT2G24830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), D111/G-patch (InterPro:IPR000467); Has 706 Blast hits to 687 proteins in 197 species: Archae - 0; Bacteria - 4; Metazoa - 400; Fungi - 113; Plants - 123; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z4ZIeggNOG:KOG2185EMBL:AC006585EMBL:AK229189
EMBL:CP002685EnsemblPlants:AT2G24830EnsemblPlants:AT2G24830.1entrez:817020
GeneID:817020Genevisible:Q9SK49GO:GO:0003677GO:GO:0046872
Gramene:AT2G24830.1hmmpanther:PTHR23329hmmpanther:PTHR23329:SF2HOGENOM:HOG000239565
InParanoid:Q9SK49InterPro:IPR000467InterPro:IPR000571KEGG:ath:AT2G24830
ncoils:CoilOMA:HIRNGECPaxDb:Q9SK49Pfam:PF00642
Pfam:PF01585Pfam:Q9SK49Pfscan:PS50103Pfscan:PS50174
PhylomeDB:Q9SK49PIR:A84641PRIDE:Q9SK49PRO:PR:Q9SK49
PROSITE:PS50103PROSITE:PS50174ProteinModelPortal:Q9SK49Proteomes:UP000006548
RefSeq:NP_180056.1SMART:SM00356SMART:SM00443SMR:Q9SK49
STRING:3702.AT2G24830.1TAIR:AT2G24830UniGene:At.22189UniGene:At.69630
UniProt:Q9SK49
Coordinates (TAIR10) chr2:-:10576993..10579154
Molecular Weight (calculated) 55937.90 Da
IEP (calculated) 5.30
GRAVY (calculated) -0.74
Length 497 amino acids
Sequence (TAIR10)
(BLAST)
001: MASEENNDLE NLLDIQLIEQ KESLSSIDEA LLSDPSNPEL LSVHEELLSA IKEVEEGLLH LKRARLLEEA DIVLNGLNHD AGVKPEHLEP EKTEEKKDLD
101: GSKCRFRHTD GRWYNGRIIG FEGSDSAKIS FLTPTSESMM ICKFFMQQRC RFGSSCRSSH GLDVPISSLK NYEQTEWKQL MVGSKIWAVS GSKYDIWRKA
201: ELESWDDELQ VGGVVFRDDK SSAKLGSDSL ALSEYAQMTD DDGEEEEEED EQQSASDSED SVSSDYDEGS PQGIGFLEST NLPRGVQTDT ALFAKWENHT
301: RGIASKMMAS MGYREGMGLG VSGQGILNPI LVKVLPAKRS LDYALEHIRN GECKSEKQKK KRSRGGKRKR GKKFAEAAKA AKQEEESKPD LFSLINEQIF
401: PTRHEKVHSE SVKNRQNKGP VDRKALVEYQ DEVRDLKLEM LKLEQMVNRN KKDLVVSEAA TRRLKEVRKA LASTLACQAA ASNAIVSKEN EKKWLKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)