AT2G24830.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), D111/G-patch (InterPro:IPR000467); Has 706 Blast hits to 687 proteins in 197 species: Archae - 0; Bacteria - 4; Metazoa - 400; Fungi - 113; Plants - 123; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:10576993..10579154 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 55937.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 497 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASEENNDLE NLLDIQLIEQ KESLSSIDEA LLSDPSNPEL LSVHEELLSA IKEVEEGLLH LKRARLLEEA DIVLNGLNHD AGVKPEHLEP EKTEEKKDLD 101: GSKCRFRHTD GRWYNGRIIG FEGSDSAKIS FLTPTSESMM ICKFFMQQRC RFGSSCRSSH GLDVPISSLK NYEQTEWKQL MVGSKIWAVS GSKYDIWRKA 201: ELESWDDELQ VGGVVFRDDK SSAKLGSDSL ALSEYAQMTD DDGEEEEEED EQQSASDSED SVSSDYDEGS PQGIGFLEST NLPRGVQTDT ALFAKWENHT 301: RGIASKMMAS MGYREGMGLG VSGQGILNPI LVKVLPAKRS LDYALEHIRN GECKSEKQKK KRSRGGKRKR GKKFAEAAKA AKQEEESKPD LFSLINEQIF 401: PTRHEKVHSE SVKNRQNKGP VDRKALVEYQ DEVRDLKLEM LKLEQMVNRN KKDLVVSEAA TRRLKEVRKA LASTLACQAA ASNAIVSKEN EKKWLKF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)