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AT2G31680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog A5D
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog A5D (RABA5d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5E (TAIR:AT1G05810.1); Has 27628 Blast hits to 27593 proteins in 754 species: Archae - 22; Bacteria - 125; Metazoa - 14573; Fungi - 3749; Plants - 3264; Viruses - 20; Other Eukaryotes - 5875 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1100eggNOG:KOG0087EMBL:AC007071EMBL:AK227705
EMBL:AY085494EMBL:BT009720EMBL:CP002685EnsemblPlants:AT2G31680
EnsemblPlants:AT2G31680.1entrez:817724Gene3D:3.40.50.300GeneID:817724
Genevisible:Q9SIP0GO:GO:0005525GO:GO:0005829GO:GO:0005886
GO:GO:0007264GO:GO:0015031Gramene:AT2G31680.1hmmpanther:PTHR24073
hmmpanther:PTHR24073:SF394HOGENOM:HOG000233968InParanoid:Q9SIP0InterPro:IPR001806
InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT2G31680KO:K07904
OMA:VIREIYTPaxDb:Q9SIP0Pfam:PF00071Pfam:Q9SIP0
Pfscan:PS51419PhylomeDB:Q9SIP0PIR:G84723PRIDE:Q9SIP0
PRO:PR:Q9SIP0PROSITE:PS51419ProteinModelPortal:Q9SIP0Proteomes:UP000006548
RefSeq:NP_180726.1SMR:Q9SIP0STRING:3702.AT2G31680.1SUPFAM:SSF52540
TAIR:AT2G31680tair10-symbols:AtRABA5dtair10-symbols:RABA5dTIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.14359UniGene:At.66393UniProt:Q9SIP0
Coordinates (TAIR10) chr2:-:13473781..13474957
Molecular Weight (calculated) 24362.60 Da
IEP (calculated) 5.01
GRAVY (calculated) -0.39
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSDDEGGEE YLFKIVIIGD SAVGKSNLLS RYARNEFNAH SKATIGVEFQ TQNMEIEGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDISRRSTF
101: ESVGRWLDEL KTHSDTTVAR MLVGNKCDLE SIRAVSVEEG KALAETEGLF FMETSALDST NVKTAFEMVI RDIYTNISRK QLNSDTYKTE LSMKNRVSLV
201: KDDNKSSTQG FGFSCCSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)