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AT3G12630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : A20/AN1-like zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1); Has 1013 Blast hits to 1009 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 428; Fungi - 9; Plants - 446; Viruses - 6; Other Eukaryotes - 124 (source: NCBI BLink).
Protein Annotations
BioGrid:5777eggNOG:ENOG4111UWCeggNOG:KOG3173EMBL:AC069474
EMBL:AK228330EMBL:AP002044EMBL:AY084755EMBL:BT009714
EMBL:CP002686EnsemblPlants:AT3G12630EnsemblPlants:AT3G12630.1entrez:820443
Gene3D:4.10.1110.10GeneID:820443Genevisible:Q9LHJ8GO:GO:0003677
GO:GO:0004842GO:GO:0005634GO:GO:0006970GO:GO:0008270
GO:GO:0009414GO:GO:0016567GO:GO:0051865Gramene:AT3G12630.1
hmmpanther:PTHR10634hmmpanther:PTHR10634:SF22HOGENOM:HOG000238229InParanoid:Q9LHJ8
IntAct:Q9LHJ8InterPro:IPR000058InterPro:IPR002653KEGG:ath:AT3G12630
OMA:CFNASLVPaxDb:Q9LHJ8Pfam:PF01428Pfam:PF01754
Pfam:Q9LHJ8Pfscan:PS51036Pfscan:PS51039PhylomeDB:Q9LHJ8
PRIDE:Q9LHJ8PRO:PR:Q9LHJ8PROSITE:PS51036PROSITE:PS51039
ProteinModelPortal:Q9LHJ8Proteomes:UP000006548RefSeq:NP_566429.1SMART:SM00154
SMART:SM00259SMR:Q9LHJ8STRING:3702.AT3G12630.1SUPFAM:SSF118310
SUPFAM:SSF57716TAIR:AT3G12630UniGene:At.27888UniGene:At.64490
UniGene:At.69245UniProt:Q9LHJ8
Coordinates (TAIR10) chr3:+:4012707..4013189
Molecular Weight (calculated) 17670.20 Da
IEP (calculated) 9.67
GRAVY (calculated) -0.46
Length 160 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQRTEKEET EFKVLETLTT TTTTLCTNNC GVTANPATNN MCQKCFNASL VSAAAGVVES GSILKRSARS VNLRSSPAKV VIRPREIDAV KKRDQQIVNR
101: CSGCRKKVGL TGFRCRCGEL FCSEHRYSDR HDCSYDYKTA GREAIARENP VVKAAKMVKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)