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AT3G01430.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.809
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2YWeggNOG:ENOG410YUM7EMBL:AC010870EMBL:AK118933
EMBL:BT005550EMBL:CP002686EnsemblPlants:AT3G01430EnsemblPlants:AT3G01430.1
entrez:821144GeneID:821144Gramene:AT3G01430.1hmmpanther:PTHR13833
hmmpanther:PTHR13833:SF41HOGENOM:HOG000239476KEGG:ath:AT3G01430OMA:MPCLASS
PhylomeDB:Q9SGH5Proteomes:UP000006548RefSeq:NP_186792.1STRING:3702.AT3G01430.1
TAIR:AT3G01430UniGene:At.41278UniProt:Q9SGH5
Coordinates (TAIR10) chr3:-:165595..166137
Molecular Weight (calculated) 20299.60 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.76
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MSHQSPPIAE VDATDDMHEA LFAKRGCCFL MPCLASSQPS TRGGSVWWQR ITTVDKLEPD ERWWIRGWRR MREWSELVAG PRWKTYIRRF GRSNCCGGGG
101: GRVGNSSGGC GGGAMPNRSS DQGKFRYDQL SYSLNFDDGN QTGHFDDEFP YRDYSMRFAA PSLPVSTKCS IDFDSDIDNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)