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AT3G16570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : rapid alkalinization factor 23
Curator
Summary (TAIR10)
Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere.
Computational
Description (TAIR10)
rapid alkalinization factor 23 (RALF23); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 33 (TAIR:AT4G15800.1); Has 261 Blast hits to 261 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4MVeggNOG:ENOG410Z3VJEMBL:AB022217EMBL:AY048301
EMBL:AY072630EMBL:AY084588EMBL:CP002686EnsemblPlants:AT3G16570
EnsemblPlants:AT3G16570.1entrez:820907GeneID:820907Genevisible:Q9LUS7
GO:GO:0004871GO:GO:0005179GO:GO:0005622GO:GO:0007267
GO:GO:0009506GO:GO:0009741GO:GO:0009742GO:GO:0019722
GO:GO:0045926GO:GO:0048046Gramene:AT3G16570.1hmmpanther:PTHR33136
hmmpanther:PTHR33136:SF5HOGENOM:HOG000237626InParanoid:Q9LUS7InterPro:IPR008801
KEGG:ath:AT3G16570OMA:PPFETECPaxDb:Q9LUS7Pfam:PF05498
Pfam:Q9LUS7PhylomeDB:Q9LUS7PRIDE:Q9LUS7PRO:PR:Q9LUS7
Proteomes:UP000006548RefSeq:NP_566555.1STRING:3702.AT3G16570.1TAIR:AT3G16570
tair10-symbols:ATRALF23tair10-symbols:RALF23TMHMM:TMhelixUniGene:At.24650
UniProt:Q9LUS7
Coordinates (TAIR10) chr3:+:5644748..5645164
Molecular Weight (calculated) 15049.80 Da
IEP (calculated) 8.60
GRAVY (calculated) -0.26
Length 138 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGLSRNSGA AAIFAILLIL AVHNWSVAVS SQSTEFAGDF PPFETECRGT IAECSVSAAL GDGGDLFYGG GEMGEEFEMD SEINRRILAT RRYISYGALR
101: RNTIPCSRRG ASYYNCRRGA QANPYSRGCS AITRCRRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)