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AT2G01850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : endoxyloglucan transferase A3
Curator
Summary (TAIR10)
EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction in the number of tertiary veins. Individual tracheary elements in the mutants are shorter, but phloem transport activity is not severely affected. EXGT-A3 plays a role in xyloglucan degradation in the differentiating tracheary elements of rosette leaves.
Computational
Description (TAIR10)
endoxyloglucan transferase A3 (EXGT-A3); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: phloem or xylem histogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 28 (TAIR:AT1G14720.1); Has 2101 Blast hits to 2091 proteins in 291 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 449; Plants - 1341; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G01850-MONOMERCAZy:GH16EC:2.4.1.207eggNOG:COG2273
eggNOG:ENOG410IGGJEMBL:AC007069EMBL:AF163821EMBL:AK317757
EMBL:AY059910EMBL:AY085835EMBL:BT008820EMBL:CP002685
EMBL:D63509EnsemblPlants:AT2G01850EnsemblPlants:AT2G01850.1entrez:814716
Gene3D:2.60.120.200GeneID:814716Genevisible:Q8LDS2GO:GO:0004553
GO:GO:0005618GO:GO:0010087GO:GO:0010411GO:GO:0016762
GO:GO:0042546GO:GO:0048046GO:GO:0071555Gramene:AT2G01850.1
hmmpanther:PTHR31062hmmpanther:PTHR31062:SF44HOGENOM:HOG000236368InParanoid:Q8LDS2
InterPro:IPR000757InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455
KEGG:ath:AT2G01850KO:K08235OMA:NIREKEWPaxDb:Q8LDS2
Pfam:PF00722Pfam:PF06955Pfam:Q8LDS2Pfscan:PS51762
PhylomeDB:Q8LDS2PIR:H84429PIRSF:PIRSF005604PRO:PR:Q8LDS2
PROSITE:PS51762ProteinModelPortal:Q8LDS2Proteomes:UP000006548RefSeq:NP_178294.1
SMR:Q8LDS2STRING:3702.AT2G01850.1SUPFAM:SSF49899TAIR:AT2G01850
tair10-symbols:ATXTH27tair10-symbols:EXGT-A3tair10-symbols:XTH27TMHMM:TMhelix
UniGene:At.21536UniProt:Q8LDS2
Coordinates (TAIR10) chr2:+:385374..387138
Molecular Weight (calculated) 38417.20 Da
IEP (calculated) 7.06
GRAVY (calculated) -0.52
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: METLSRLLVF MSLFSGLVSG FALQNLPITS FEESYTQLFG DKNLFVHQDG KSVRLTLDER TGSGFVSNDY YLHGFFSASI KLPSDYTAGV VVAFYMSNGD
101: MYEKNHDEID FEFLGNIREK EWRVQTNIYG NGSTHSGREE RYNLWFDPTE DFHQYSILWS DSHIIFFVDN VPIREVKRTA EMGGHFPSKP MSLYTTIWDG
201: SKWATNGGKY GVNYKYAPYI ARFSDLVLHG CPVDPIEQFP RCDEGAAEDM RAAQEITPSQ RSKMDVFRRR LMTYSYCYDR ARYNVALSEC VVNPAEAQRL
301: RVYDPVRFGG IPRRHRNGKH RSKRSRVDGT ESI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)