AT4G21700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.434 golgi 0.423 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF2921) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF2921); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2921 (InterPro:IPR021319); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2921) (TAIR:AT1G52780.1); Has 127 Blast hits to 111 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11529956..11532844 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108901.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.89 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||
| Length | 962 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATFWPSSSS SNHPSIFLYL QSYPSLFFLL FLTTSATSLT VASLVNPHSF IAPRIPYSDH CNHIVPESPI DPSPSAVFSH ASLAFDVSFF SGGDLFFNRF 101: QSQNGDVKSA RFRPKSIRKT LGDGKIYKVE AKLTLQISKT SASSSYYGGD FGQKKLQVMQ IDGRSSWGGA SFDFYGFWSE STGQVCMVGS TQVLSVEGTR 201: LKIFDARLML NYSKESNIYG SLVKGVLESV DSLSEFKTVL ILGARNTPLN YEYKLLEQSK LDCGVNGGES LSLENVLGGM CKVFEGRSHV FGLMYRNDCG 301: VDHSCSPFGS DVEYTPGFMS MLSFLCDGEK MRMLLSFSNM SGYSSLFPFD PRTSLVAEGS WDVERNRFCG VACRILNFSD SLSNAVVDDC SLRLSLRFPA 401: ILSIKSMAPV VGELWSAQAE SDPSYFRRIE FSSLNDQLWR FPSLRYEYTE SERVGKLCGA GKSRPKRKGN HYPDAQTSDM RFVMSVKYSG EGNVLRTARA 501: SPYFVGDRLY RDLLVRGQGV GLTGIPMNVN SVTKSFTNIT YRIRSLNPNS ESRGDIYAEG TYDRDTGELC MVGCQSVRLK NTVAIQNETV DCSLAIKINF 601: SPIDSRSDDR LKGTIKSTRE KTDPLYVGRM EVLSRSIYVH QAKESVWRMD LEVAMVLVSN TLSCLFLGMQ LYHMKQHQEA LPFISVAMLI LITLGHMIPL 701: LLNFEELFKG SHNQRNLFFE NDRWLEAKEI VVRIVTLIAF LLECRLLQLA WTARKTGDHH HREDVWKAEK KVSYVCLPLY ITGGLIAWLV NRNRTPKRIV 801: YIGKPQARNL LYRPVNLKRS FQRPPLWKDL KSYGGLMLDA FLLPQILFNG FSNSDLKPLA ALFYVGNSFV RLLPHAYDLY RSHSYGKILD WSFIYANHKM 901: DYYSTAWDII ILCIGFLFAF LIFLQQRFGG RCFIPKRFRE YVGYEKVVEL QQAGEQHNTN DS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)