AT1G55620.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
|||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||
| Description (TAIR10) | protein_coding : chloride channel F | ||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a chloride channel protein that has been localized to the chloroplast and golgi apparatus. Complements yeast gef1 mutant and therefor may function to acidify the golgi lumen. | ||||||||||||||||
| Computational Description (TAIR10) |
chloride channel F (CLC-F); FUNCTIONS IN: ion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport, transmembrane transport; LOCATED IN: Golgi apparatus, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: chloride channel E (TAIR:AT4G35440.2); Has 8610 Blast hits to 8392 proteins in 1951 species: Archae - 280; Bacteria - 6051; Metazoa - 795; Fungi - 382; Plants - 225; Viruses - 0; Other Eukaryotes - 877 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
|
||||||||||||||||
| Coordinates (TAIR10) | chr1:-:20787338..20790313 | ||||||||||||||||
| Molecular Weight (calculated) | 62551.90 Da | ||||||||||||||||
| IEP (calculated) | 8.33 | ||||||||||||||||
| GRAVY (calculated) | 0.15 | ||||||||||||||||
| Length | 585 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMHGLLEILD QIRQSNSSQR QGLDFLAGIY PVIKAIQAAV TLGTGCSLGP EGPSVDIGKS CANGFALMME NNRERRIALT AAGAASGIAS GFNAAVAGCF 101: FAIETVLRPL RAENSPPFTT AMIILASVIS STVSNALLGT QSAFTVPSYD LKSAAELPLY LILGMLCGAV SVVFSRLVTW FTKSFDFIKD KFGLPAIVCP 201: ALGGLGAGII ALKYPGILYW GFTNVEEILH TGKSASAPGI WLLAQLAAAK VVATALCKGS GLVGGLYAPS LMIGAAVGAV FGGSAAEIIN RAIPGNAAVA 301: QPQAYALVGM AATLASMCSV PLTSVLLLFE LTKDYRILLP LMGAVGLAIW VPSVANQGKE SDSSEGRSTG RGYSSLSPSE RKTEGVWRHT DNADSLELTV 401: IENPDHNSFL DEETILEDLK VMRVMSKNYV KVSSGTTLRE ARNILKESHQ NCIMVVDDDD FLAGILTHGD IRRYLSNNAS TILDENTCPV SSVCTKKISY 501: RGQERGLLTC YPDATVGVAK ELMEARGVKQ LPVVKRGEVI HKGKRRKLLG LLHYDSIWTF LRDEMSRRRS INDRRKDKEV GTNGH |
||||||||||||||||
| See Also |
|
||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)