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AT1G16020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.751
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1712)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1712); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1712, fungi (InterPro:IPR013176); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1712) (TAIR:AT1G80910.1); Has 187 Blast hits to 185 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 3; Plants - 43; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
DNASU:838172eggNOG:ENOG410XRE1eggNOG:KOG2622EMBL:CP002684
EnsemblPlants:AT1G16020EnsemblPlants:AT1G16020.1entrez:838172ExpressionAtlas:F4I2S4
GeneID:838172GO:GO:0016192GO:GO:0031988GO:GO:0043231
Gramene:AT1G16020.1InParanoid:F4I2S4InterPro:IPR013176KEGG:ath:AT1G16020
ncoils:CoilOMA:CSGAFLMPaxDb:F4I2S4Pfam:PF08217
PRIDE:F4I2S4ProteinModelPortal:F4I2S4Proteomes:UP000006548RefSeq:NP_563989.1
STRING:3702.AT1G16020.1TAIR:AT1G16020UniGene:At.11850UniGene:At.50930
UniGene:At.64207UniProt:F4I2S4
Coordinates (TAIR10) chr1:+:5498633..5501018
Molecular Weight (calculated) 57843.40 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.16
Length 515 amino acids
Sequence (TAIR10)
(BLAST)
001: MASMSSGDES LRLCMFDLRR GQTEGQELEK ILFFYPADLD FSTQLSVIGL SEGLITFTRL FSPEAACEVI EAERHSHVFY EAEPDIWMVM VVEKNKETGA
101: IWRIDALRRV LKEVHSLFVM FHGSIRALIE KEPTGGLTRS LLYPFITDYL STFQIWSLSE DCCCEFFVGK KLQLPTFRET LRERGTVQML TLARDTAVEV
201: QSLVQVLDSC AGSLRCHSMI LFQDLLVSTT LSADDTVDLF TFAVMRLTSK ALSSDTSSWS YLRKGPGSSE ISSRSNLAPV GSIDSLHSRN GNNMHHVIRP
301: LQNDKWTKGK DGFLITDIWG LETGGSPDSA IPTIWLQQTQ ERMYLLAYQH KSLTLLLLMP TNAIVNGDLS ISAVKQQVIE DASLRILKIE ENISRGWGGE
401: NAYHIKGYRY LVVDNDTKVS RSSPSGKVTT LAKESLLALN KLREEVDSEK SRAKGQEKDM EICIRAKNNV WVIARVTRGK ELYMALEKGS DTLLDTTDAV
501: GRFSNRYCSG AFLMD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)