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AT5G55630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21697507 (2011): plant-type vacuole plant-type vacuole membrane
  • PMID:19825594 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:16984403 (2006): plant-type vacuole
  • PMID:15505206 (2004): plant-type vacuole
  • PMID:12148538 (2002): plant-type vacuole plant-type vacuole membrane
  • PMID:11821043 (2002): plant-type vacuole
  • PMID:25641898 (2015): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Outward rectifying potassium channel protein
Curator
Summary (TAIR10)
Encodes AtTPK1 (KCO1), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK1 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo. Voltage-independent and Ca2+-activated K+ channel. Activated by 14-3-3 proteins.
Computational
Description (TAIR10)
ATKCO1; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), Potassium channel, two pore-domain (InterPro:IPR003280), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: Ca2+ activated outward rectifying K+ channel 5 (TAIR:AT4G01840.1); Has 4513 Blast hits to 4370 proteins in 1126 species: Archae - 145; Bacteria - 2057; Metazoa - 1231; Fungi - 181; Plants - 220; Viruses - 0; Other Eukaryotes - 679 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G55630-MONOMERBioCyc:ARA:GQT-2670-MONOMERBioCyc:MetaCyc:MONOMER-14554BioGrid:20901
eggNOG:COG1226eggNOG:KOG1418EMBL:AB009050EMBL:AK229302
EMBL:AY087147EMBL:CP002688EMBL:X97323EMBL:Y07825
EnsemblPlants:AT5G55630EnsemblPlants:AT5G55630.1EnsemblPlants:AT5G55630.2entrez:835657
Gene3D:1.10.238.10GeneID:835657Genevisible:Q8LBL1GO:GO:0005216
GO:GO:0005249GO:GO:0005774GO:GO:0009705GO:GO:0010029
GO:GO:0010119GO:GO:0016021GO:GO:0030007GO:GO:0046872
GO:GO:0051260Gramene:AT5G55630.1Gramene:AT5G55630.2hmmpanther:PTHR11003
hmmpanther:PTHR11003:SF135HOGENOM:HOG000238193InParanoid:Q8LBL1InterPro:IPR003280
InterPro:IPR011992InterPro:IPR013099InterPro:IPR018247InterPro:IPR031144
iPTMnet:Q8LBL1KEGG:ath:AT5G55630KO:K05389OMA:TMARDEE
PANTHER:PTHR11003:SF135PaxDb:Q8LBL1Pfam:PF07885Pfam:Q8LBL1
PhylomeDB:Q8LBL1PRIDE:Q8LBL1PRINTS:PR01333PRO:PR:Q8LBL1
PROSITE:PS00018ProteinModelPortal:Q8LBL1Proteomes:UP000006548RefSeq:NP_200374.1
RefSeq:NP_851196.1scanprosite:PS00018SMR:Q8LBL1STRING:3702.AT5G55630.1
SUPFAM:SSF47473SUPFAM:SSF81324TAIR:AT5G55630tair10-symbols:ATKCO1
tair10-symbols:ATTPK1tair10-symbols:KCO1tair10-symbols:TPK1TCDB:1.A.1.7.3
TMHMM:TMhelixUniGene:At.20254UniProt:Q8LBL1
Coordinates (TAIR10) chr5:+:22531718..22532893
Molecular Weight (calculated) 40729.40 Da
IEP (calculated) 6.66
GRAVY (calculated) 0.09
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSDAARTPL LPTEKIDTMA QDFNLNSRTS SSRKRRLRRS RSAPRGDCMY NDDVKIDEPP PHPSKIPMFS DLNPNLRRVI MFLALYLTIG TLCFYLVRDQ
101: ISGHKTSGVV DALYFCIVTM TTVGYGDLVP NSSASRLLAC AFVFSGMVLV GHLLSRAADY LVEKQEALLV RAFHLRQSFG PTDILKELHT NKLRYKCYAT
201: CLVLVVLFIV GTIFLVMVEK MPVISAFYCV CSTVTTLGYG DKSFNSEAGR LFAVFWILTS SICLAQFFLY VAELNTENKQ RALVKWVLTR RITNNDLEAA
301: DLDEDGVVGA AEFIVYKLKE MGKIDEKDIS GIMDEFEQLD YDESGTLTTS DIVLAQTTSQ IQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)