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AT5G06660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.944
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function DUF106, transmembrane
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF106, transmembrane (InterPro:IPR002809), Uncharacterised conserved protein UCP023322, transmembrane eukaryotic (InterPro:IPR008559); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF106, transmembrane (TAIR:AT3G12030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR8BeggNOG:KOG3312EMBL:AP002543EMBL:AY039847
EMBL:AY060536EMBL:CP002688EnsemblPlants:AT5G06660EnsemblPlants:AT5G06660.1
entrez:830554GeneID:830554GO:GO:0016021Gramene:AT5G06660.1
hmmpanther:PTHR20917InterPro:IPR002809InterPro:IPR008559KEGG:ath:AT5G06660
ncoils:CoilOMA:WLMVYRTPANTHER:PTHR20917Pfam:PF01956
PhylomeDB:Q9FG04PIRSF:PIRSF023322Proteomes:UP000006548RefSeq:NP_196284.1
SMART:SM01415STRING:3702.AT5G06660.1TAIR:AT5G06660TMHMM:TMhelix
UniGene:At.25423UniProt:Q9FG04
Coordinates (TAIR10) chr5:+:2046863..2047453
Molecular Weight (calculated) 21418.40 Da
IEP (calculated) 10.48
GRAVY (calculated) 0.11
Length 196 amino acids
Sequence (TAIR10)
(BLAST)
001: MATAIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TSSYKSLKSS IDKASKKLET MKTDNPSSKL TNKKSKTKKI DRVESSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVRKMS HRGLKGDDST DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)