suba logo
AT5G02280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.527
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNARE-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: cis-Golgi network; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sybindin-like protein (InterPro:IPR007233), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT1G51160.2); Has 567 Blast hits to 560 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 139; Plants - 109; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Protein Annotations
DNASU:831680eggNOG:COG5122eggNOG:KOG3369EMBL:AL162874
EMBL:AY088869EMBL:BT003933EMBL:BT005052EMBL:CP002688
EnsemblPlants:AT5G02280EnsemblPlants:AT5G02280.1entrez:831680GeneID:831680
GO:GO:0005737GO:GO:0005801GO:GO:0006888Gramene:AT5G02280.1
hmmpanther:PTHR23249HOGENOM:HOG000165619InterPro:IPR007233InterPro:IPR011012
KEGG:ath:AT5G02280OMA:LTSNEYLPANTHER:PTHR23249Pfam:PF04099
PhylomeDB:Q9LZ97PIR:T48249PRO:PR:Q9LZ97Proteomes:UP000006548
Reactome:R-ATH-204005RefSeq:NP_195848.1SMART:SM01399SMR:Q9LZ97
STRING:3702.AT5G02280.1SUPFAM:SSF64356TAIR:AT5G02280UniGene:At.21647
UniGene:At.71133UniProt:Q9LZ97
Coordinates (TAIR10) chr5:+:469377..470129
Molecular Weight (calculated) 16012.30 Da
IEP (calculated) 5.13
GRAVY (calculated) 0.03
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAIYSLYII NKSGGLIFYK DCGTKGRMDT NDSLRVASLW HSMHAISQQL SPVNGCSGIE LLEADTFDLH CFQSLPGTKF FVVCEPGTPH MESLLRYIYE
101: LYTDYVLKNP FYEIEMPIRC ELFDINLTQA VQSDRVALLG R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)