suba logo
AT5G44110.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Encodes a member of the NAP subfamily of ABC transporters.
Computational
Description (TAIR10)
POP1; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G03905.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19684eggNOG:COG4586eggNOG:KOG2355EMBL:AB005239
EMBL:AF127664EMBL:AK228176EMBL:AY087299EMBL:BT006201
EMBL:CP002688EnsemblPlants:AT5G44110EnsemblPlants:AT5G44110.1entrez:834434
ExpressionAtlas:Q9XF19Gene3D:3.40.50.300GeneID:834434Genevisible:Q9XF19
GO:GO:0005215GO:GO:0005524GO:GO:0005737GO:GO:0010114
GO:GO:0010218GO:GO:0016887hmmpanther:PTHR12847hmmpanther:PTHR12847:SF6
HOGENOM:HOG000200636InParanoid:Q9XF19IntAct:Q9XF19InterPro:IPR003439
InterPro:IPR003593InterPro:IPR027417OMA:MSSRQMAPaxDb:Q9XF19
Pfam:PF00005Pfam:Q9XF19Pfscan:PS50893PhylomeDB:Q9XF19
PRIDE:Q9XF19PRO:PR:Q9XF19PROSITE:PS50893ProteinModelPortal:Q9XF19
Proteomes:UP000006548RefSeq:NP_199224.1SMART:SM00382SMR:Q9XF19
STRING:3702.AT5G44110.1SUPFAM:SSF52540TAIR:AT5G44110tair10-symbols:ATNAP2
tair10-symbols:ATPOP1tair10-symbols:POP1UniGene:At.8709UniProt:Q9XF19
Coordinates (TAIR10) chr5:-:17754222..17755672
Molecular Weight (calculated) 31361.90 Da
IEP (calculated) 6.63
GRAVY (calculated) -0.10
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKNASAVD GAIRVSGMQF SYDVQDPIFF DFNLDLPAGS RCLLVGANGS GKTTLLKILA GKHMVGGKNV VQVLDRSAFH DTELVCSGDL SYLGGSWSKT
101: AGSAGDIPLQ GDFSAEHMIF GVEGIDPFRR EKLIDLLDIN LQWRMHKVSD GQRRRVQICM GLLHPFKVLL LDEVTVDLDV VARMDLLEFF KEECEQRGAT
201: IVYATHIFDG LETWASHLAY INGGELKLSA KLDEIKDLKT SPNLLSVVEA WLRSETKVEK KTKKKPVVTS PFMSSRQMAY YR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)