suba logo
AT1G56250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.868
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phloem protein 2-B14
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
phloem protein 2-B14 (PP2-B14); FUNCTIONS IN: carbohydrate binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: phloem protein 2-B13 (TAIR:AT1G56240.1); Has 533 Blast hits to 518 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 533; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:27303eggNOG:ENOG410IEYHeggNOG:ENOG4111AE6EMBL:AC069159
EMBL:AK175677EMBL:BT010431EMBL:CP002684EnsemblPlants:AT1G56250
EnsemblPlants:AT1G56250.1entrez:842078GeneID:842078GO:GO:0005634
GO:GO:0005737GO:GO:0030246Gramene:AT1G56250.1hmmpanther:PTHR32278
hmmpanther:PTHR32278:SF2HOGENOM:HOG000239607InParanoid:Q9C7K0IntAct:Q9C7K0
InterPro:IPR001810InterPro:IPR025886KEGG:ath:AT1G56250OMA:YLAYLIM
PaxDb:Q9C7K0Pfam:PF14299Pfam:Q9C7K0Pfscan:PS50181
PhylomeDB:Q9C7K0PIR:B96604PRIDE:Q9C7K0PRO:PR:Q9C7K0
PROSITE:PS50181ProteinModelPortal:Q9C7K0Proteomes:UP000006548RefSeq:NP_176021.1
STRING:3702.AT1G56250.1SUPFAM:SSF81383TAIR:AT1G56250tair10-symbols:AtPP2-B14
tair10-symbols:PP2-B14UniGene:At.42819UniGene:At.66831UniProt:Q9C7K0
Coordinates (TAIR10) chr1:-:21061746..21062844
Molecular Weight (calculated) 31841.90 Da
IEP (calculated) 5.80
GRAVY (calculated) -0.39
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMLPEACIA NILAFTSPAD AFSSSEVSSV FRLAGDSDFV WEKFLPSDYK SLISQSTDHH WNISSKKEIY RCLCDSLLID NARKLFKINK FSGKISYVLS
101: ARDISITHSD HASYWSWSNV SDSRFSESAE LIITDRLEIE GKIQTRVLSA NTRYGAYLIV KVTKGAYGLD LVPAETSIKS KNGQISKSAT YLCCLDEKKQ
201: QMKRLFYGNR EERMAMTVEA VGGDGKRREP KCRDDGWMEI ELGEFETREG EDDEVNMTLT EVKGYQLKGG ILIDGIEVRP KT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)