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AT2G22270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39860.2); Has 247 Blast hits to 231 proteins in 42 species: Archae - 0; Bacteria - 17; Metazoa - 14; Fungi - 5; Plants - 145; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVZZeggNOG:ENOG41105E9EMBL:AC007168EMBL:CP002685
EnsemblPlants:AT2G22270EnsemblPlants:AT2G22270.1entrez:816760GeneID:816760
Gramene:AT2G22270.1hmmpanther:PTHR31132hmmpanther:PTHR31132:SF2HOGENOM:HOG000239183
InterPro:IPR025131KEGG:ath:AT2G22270OMA:RIHYHQDPfam:PF13266
PhylomeDB:Q9SID9PIR:G84610Proteomes:UP000006548RefSeq:NP_565531.1
TAIR:AT2G22270UniGene:At.21395UniProt:Q9SID9
Coordinates (TAIR10) chr2:+:9463765..9465282
Molecular Weight (calculated) 36431.70 Da
IEP (calculated) 9.67
GRAVY (calculated) -1.25
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEERNNPHH STADLLSWSE IRRPDYSTAA NRSNQPSDGM NDVLGGGGQI TNAETKSLNT NVSHRKNCSG HKLKEMTGSD IFSDDGKYDP NHQTRIHYHQ
101: DQLSQISFSG EENATTPMNG KDDPNHQTRI HYHQDQRSQI SFSGEENVTP KKPTTLNEAA KQKELSRTVE TQADSKCKKK QISNTKNKAM SGHDIFASPE
201: SQPRRLFGGA TQSEVKGNKN TEESAPRSSR ASVKTSNGQS SNRLFSEEHV VKSSKKIHNQ KSQFQGLTSN GIFKSDKIPP GYSEKMQSSA KKREMSGHNI
301: FADGKSEYRD YYGGARRPPG GESSISLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)