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AT1G76660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEU3eggNOG:ENOG4111TAJEMBL:AC010718EMBL:AK117141
EMBL:BT005378EMBL:CP002684EnsemblPlants:AT1G76660EnsemblPlants:AT1G76660.1
entrez:843999GeneID:843999Genevisible:Q9SRE5GO:GO:0005886
Gramene:AT1G76660.1hmmpanther:PTHR31798hmmpanther:PTHR31798:SF3HOGENOM:HOG000237404
InParanoid:Q9SRE5iPTMnet:Q9SRE5KEGG:ath:AT1G76660OMA:TEEHIEP
PaxDb:Q9SRE5Pfam:Q9SRE5PhylomeDB:Q9SRE5PIR:H96794
PRIDE:Q9SRE5PRO:PR:Q9SRE5ProteinModelPortal:Q9SRE5Proteomes:UP000006548
RefSeq:NP_177792.1SwissPalm:Q9SRE5TAIR:AT1G76660UniGene:At.43714
UniGene:At.67770UniProt:Q9SRE5
Coordinates (TAIR10) chr1:-:28769157..28771036
Molecular Weight (calculated) 46432.20 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.75
Length 431 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSEQDQRKR WGGCLGVFSC FKSQKGGKRI VPASRIPEGG NVSASQPNGA HQAGVLNNQA AGGINLSLLA PPSSPASFTN SALPSTTQSP NCYLSLAANS
101: PGGPSSSMYA TGPYAHETQL VSPPVFSTFT TEPSTAPFTP PPELARLTAP SSPDVPYARF LTSSMDLKNS GKGHYNDLQA TYSLYPGSPA SALRSPISRA
201: SGDGLLSPQN GKCSRSDSGN TFGYDTNGVS TPLQESNFFC PETFAKFYLD HDPSVPQNGG RLSVSKDSDV YPTNGYGNGN QNRQNRSPKQ DMEELEAYRA
301: SFGFSADEII TTSQYVEITD VMDGSFNTSA YSPSDGQKLL RREANLLSQT SPKSEADLDS QVVDFQSPKS SNSYKDHKQR NRIHADEEAL LSRVGSVKGS
401: RSYHISSSDA EVEYRRGRSL RESRENRHRK A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)