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AT3G10760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G05090.1); Has 1702 Blast hits to 1694 proteins in 80 species: Archae - 0; Bacteria - 3; Metazoa - 31; Fungi - 6; Plants - 1631; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJGFeggNOG:ENOG41125WBEMBL:AC011708EMBL:CP002686
EnsemblPlants:AT3G10760EnsemblPlants:AT3G10760.1entrez:820245Gene3D:1.10.10.60
GeneID:820245GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT3G10760.1hmmpanther:PTHR31442
hmmpanther:PTHR31442:SF1HOGENOM:HOG000238691InterPro:IPR001005InterPro:IPR006447
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT3G10760OMA:DSDWFAR
Pfam:PF00249Pfscan:PS51294PhylomeDB:Q9SG82PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_187687.1SMR:Q9SG82SUPFAM:SSF46689
TAIR:AT3G10760TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.39869
UniProt:Q9SG82
Coordinates (TAIR10) chr3:+:3369814..3370821
Molecular Weight (calculated) 36116.00 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.57
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MREDDSDWFA RWEEELPSPE ELMPISQSLI SPDLALAFDI RTPNHGNGNS NQPHHHHHHQ TTPPTPSQLQ LPSSQANSSA EFAADSADLG SGGAAGDEPA
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)